View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_7 (Length: 491)
Name: NF5975_low_7
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 7290034 - 7290496
Alignment:
| Q |
19 |
atctgatgtgtacttttatatttcttatattatgaatcttatatgtttgtagtttaatacaaacaacaacttaaaattctctatttgaatattaaagcaa |
118 |
Q |
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| T |
7290034 |
atctgatgtgtacttttatatttcttatattatgaatcctatatggtggtagtttaatacaaacaacaacttaaaattctctatttgagtattaaagcaa |
7290133 |
T |
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| Q |
119 |
tggattttctagcagctatcagttatttttctccttttattaatattcacattgtggatatattggatattaaggattgtagtgtttctttaagagtatc |
218 |
Q |
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| T |
7290134 |
tggattttctagcagctatcagttatttttctccttttattaatattcacattgtggatatattggatattaaggattgtagtgtttctttaagagtatc |
7290233 |
T |
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| Q |
219 |
agtaatcaatgattatattccttatattcttgatgcaagttgatgataatcgtcttttggtatgttgggcagaattatgcacaaacatactttaggtaaa |
318 |
Q |
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| T |
7290234 |
agtaatcaatgattatattccttgtattcttgatgcaagttgatgataatcgtcttttggtatgtttggcagaattatgcacaaacatactttaggtaaa |
7290333 |
T |
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| Q |
319 |
ataaacttatcttttatgtcttgcatggtagtgccttcaaggtccaagttatggttgatgtaaggttacattacagtgctattttgatttatagggagtg |
418 |
Q |
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| T |
7290334 |
ataaacttgtcttttatgccttgcatggtggtgccttcaaggtccaagttatggttgatttaaggttacattacattattattttgatttatagggagtg |
7290433 |
T |
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| Q |
419 |
acaaaccaaaaagttcattatatatagacataacaaatcacaatagaaaaatacggccctttg |
481 |
Q |
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| T |
7290434 |
acaaaccaaaaagttcattatatatagacataacaaatcacaatagaaaaatatggccctttg |
7290496 |
T |
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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 34452393 - 34452469
Alignment:
| Q |
101 |
atttgaatattaaagcaat--ggattttctagcagctatcagttatttttctcc-ttttattaatattcacattgtg |
174 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
34452393 |
atttgagtattaaagcaatatggattttctagcagctatcagttatttctctccttttttttaatattcacattgtg |
34452469 |
T |
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