View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5975_low_8 (Length: 468)
Name: NF5975_low_8
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 197 - 343
Target Start/End: Complemental strand, 44656107 - 44655966
Alignment:
| Q |
197 |
cttataatctaagactagtaatcaattttttcagaaatatctcaaagttcatgatcctctaataatcgatttctacatcctgaaaatagatttatgtagt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44656107 |
cttataatctaagactagtaatcaattttttcagaaatatctcaaagttcatc-----ctaataatcgatttctacatcctgaaaatagatttatgtagt |
44656013 |
T |
|
| Q |
297 |
tcaaaactgatttatgtaccaagaaacaattttaaactcaacaaaaa |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44656012 |
tcaaaactgatttatgtaccaagaaacaattttaaactcaacaaaaa |
44655966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 44656222 - 44656110
Alignment:
| Q |
36 |
tcaaagaacaagcattatgcataaagcgaagccgaatgagatgtttaaaagggaacagtttaattataactctatgggtgggcaaacgaagaagactaca |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44656222 |
tcaaagaacaagcattatgcataaagcgaagccgaatgagatgtttaaaagggaacagtttaattataactctatgggtaggcaaacgaagaagactaca |
44656123 |
T |
|
| Q |
136 |
aacaatagggaat |
148 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44656122 |
aacaatagggaat |
44656110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 390 - 466
Target Start/End: Complemental strand, 44655515 - 44655439
Alignment:
| Q |
390 |
acaattcacgcaaaatacatgcatgaacacataatctaacacaatcatatcaaacaaaatactatcaacgtataatc |
466 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44655515 |
acaattcacgcaaaatacatgcatgaacccataatctaacacaatcatatcaaacaaaatacaatcaacgtataatc |
44655439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University