View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_9 (Length: 464)
Name: NF5975_low_9
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 195 - 448
Target Start/End: Complemental strand, 39411405 - 39411152
Alignment:
| Q |
195 |
caaaaatttaacatttattattagaatatgataataatatagaagagaagttaacatctgatgaacagttgagaacaaaataactaacaactatcaattg |
294 |
Q |
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| T |
39411405 |
caaaaatttaacatttattattagaatatgataataatatagaagaggagttaacatctgatgaacagttgagaacaaaataactaacagctatcaattg |
39411306 |
T |
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| Q |
295 |
aaaaattcaacactaaaatatagtattggataaagttagaaatgaaaagacactcttactttgtttaatacaaattgtaacgtggatgcaatctttaata |
394 |
Q |
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| T |
39411305 |
aaaaattcaacactaaaatatagtattggataaagttagaaatgaaaagacactcttactttgtttaatacaaattgtaacgtggatgcaatctttaata |
39411206 |
T |
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| Q |
395 |
ctattagttttgtgcaattactgcttaagaaaacattacataactaatataatg |
448 |
Q |
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| T |
39411205 |
ctattagttttgtgcaattactgcttaagaaaacattacataactaatataatg |
39411152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 39411612 - 39411427
Alignment:
| Q |
11 |
ataattctaaaaaataatattgagaaccctgtacatgattttgaaattaaatgggaaacattgttaaaaactgatcattttttattatgttattggccaa |
110 |
Q |
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| T |
39411612 |
ataattctaaaaaataatattgagaaccctgtacatgattttgaaattaaatgggaaacattgtttaaaaccgattattttttattatgttattggccaa |
39411513 |
T |
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| Q |
111 |
tgaccaacacatactcaaataaacacacacgaggaggaaatatgagatgacccgggttcaaacctgggattacacataagatacca |
196 |
Q |
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| T |
39411512 |
tgatcaacgaatactcaaataaatacatacgaggaggaaacatgagatgacccggattcaaacctgggattacacataagatacca |
39411427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 25702370 - 25702342
Alignment:
| Q |
117 |
acacatactcaaataaacacacacgagga |
145 |
Q |
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| T |
25702370 |
acacatactcaaataaacacacacgagga |
25702342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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