View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5977-Insertion-10 (Length: 304)
Name: NF5977-Insertion-10
Description: NF5977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5977-Insertion-10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 40471278 - 40471573
Alignment:
| Q |
9 |
atcttgaaccattccatcagaaatcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatt |
108 |
Q |
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| T |
40471278 |
atcttgaaccattccatcagaaatcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatt |
40471377 |
T |
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| Q |
109 |
tctgcaatctcaccatctaatgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttcctttta |
208 |
Q |
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| T |
40471378 |
tctgcaatctcaccatctaatgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttcctttta |
40471477 |
T |
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| Q |
209 |
cttgcttctgtccatattttctccagttatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgt |
304 |
Q |
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| T |
40471478 |
cttgcttctgtccatattttctccagttatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgt |
40471573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 26332543 - 26332607
Alignment:
| Q |
169 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctcca |
233 |
Q |
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| T |
26332543 |
gtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctcca |
26332607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 16863880 - 16863600
Alignment:
| Q |
9 |
atcttgaaccattccatcagaaatcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatt |
108 |
Q |
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| T |
16863880 |
atcttgaaccattccatcagaagtcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatt |
16863781 |
T |
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| Q |
109 |
tctgcaatctcaccatctaatgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttcctttta |
208 |
Q |
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| T |
16863780 |
tctgcaatctcaccatctaatgatctttcaactttctttttaactggataattaggatatgtgcacttgtaataacttcgaagatactcg---------- |
16863691 |
T |
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| Q |
209 |
cttgcttctgtccatattttctccagttatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatg |
303 |
Q |
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| T |
16863690 |
----cttctttccatattttctctagttatatccatcatacgaaggtctatcaacattatttgtggatggtaatgctttttggtcctcctcaatg |
16863600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 2056406 - 2056300
Alignment:
| Q |
139 |
actttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttat |
238 |
Q |
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| T |
2056406 |
actttctttttaactggacaatttgaatgagtacacttgtagtaacttcgagggtactcgctacccttaacttgcttttggccatattttctccaattat |
2056307 |
T |
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| Q |
239 |
atccatc |
245 |
Q |
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| T |
2056306 |
atccatc |
2056300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 26967036 - 26967130
Alignment:
| Q |
153 |
tggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
247 |
Q |
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| T |
26967036 |
tggacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcat |
26967130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 18876301 - 18876394
Alignment:
| Q |
154 |
ggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
247 |
Q |
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| T |
18876301 |
ggacagttaggatgcgtgcacttgtaataacttcgaggaaactcgctacctttcacctgtttctgtccgtatttcctccagttgtagccatcat |
18876394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 247
Target Start/End: Original strand, 31615312 - 31615430
Alignment:
| Q |
129 |
tgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatatttt |
228 |
Q |
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| T |
31615312 |
tgatctctcaactttcttctttgtaggacagttagggtatgtgcatttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatatttt |
31615411 |
T |
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| Q |
229 |
ctccagttatatccatcat |
247 |
Q |
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| T |
31615412 |
cgccaattgtatccatcat |
31615430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 3669270 - 3669194
Alignment:
| Q |
169 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatc |
245 |
Q |
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||||||||||||||||||| |||| || |||||||| ||||| |||| ||||||||||||||| || |||||||| |
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| T |
3669270 |
gtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatc |
3669194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 32110260 - 32110321
Alignment:
| Q |
175 |
ttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagtt |
236 |
Q |
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|||||||||||||||||| |||||| ||||| ||||| || |||||||| || |||||||| |
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| T |
32110260 |
ttgtaataacttcgaggaaactcgcaacctttcacttgtttttgtccatacttcctccagtt |
32110321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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