View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5977-Insertion-2 (Length: 982)
Name: NF5977-Insertion-2
Description: NF5977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5977-Insertion-2 |
 | |
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| [»] scaffold0005 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 740; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 8 - 943
Target Start/End: Complemental strand, 16920023 - 16919085
Alignment:
| Q |
8 |
actttccaaatgtttggaaccttgttcataaagtttccatccctatgcaggagatagaagatgatctggtttggacacatacaacaaatggtagtttatc |
107 |
Q |
| |
|
|||||||| |||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
16920023 |
actttccagatgtatggaatcttgttcacaaagttaccatccctatgcaggagatagaagatgatctggtttggacacatacaacaaatggaagcttatc |
16919924 |
T |
|
| Q |
108 |
ttttaaggatgcttataagtttaaagacaccccttcccagtctattcaatgggccaaaactatttggtctccaaacattccccctatcaaaatctctgct |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16919923 |
ttttaaggatgcttatgagtttaaagacaccccttcccagtctattcaatgggccaaaactatctggtctccaaacattccccc-atcaaaatctctgct |
16919825 |
T |
|
| Q |
208 |
tgcatggagattaatgaacgataaaatcccagttgatgagaacctaaaagatagaggatgccatttgccttcagtttgcagtctttgcatggtttcggag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16919824 |
tgcatggagattaatgaacgataaaatcccagttgatgagaacctaaaagatagaggatgtcatttgccttcagtttgcagtctttgcatggtttctgag |
16919725 |
T |
|
| Q |
308 |
gaaacgatttttcaccttttctttgattgtccttatgctcttcatctttggtgttggcttgcttcaattctcaaccaatctcttcatctttcagcgttgg |
407 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
16919724 |
gaaacggcttttcacctattctttgattgtccttatgctcttcatctttggtgttggctggcttcaaatctcaaccaatctcttcatttttcagctttgg |
16919625 |
T |
|
| Q |
408 |
aagaaatttggggccttagtggaagaggttggtctcctcaatgtagattaacaattattgctgctatcgttaacatcatttctgctatttggtatgctag |
507 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |
|
|
| T |
16919624 |
aagaaatttggggccttagtgaaagaggttggtctccacagtgtagattaacaattattgctgctgttgttaacattatttctgctatttggtacgctag |
16919525 |
T |
|
| Q |
508 |
gaatcaatgcagattccaaaataggaggattcattggaagagtgctatatctcatgtcactgtaaatgtttctctgtctgctagcaactctaatttatca |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
16919524 |
gaatcaatgcagattccaaaataggaggattcattggaagagtgctatatctcatatcactgtaaatgtttccctatctgctagcaactctaacttatca |
16919425 |
T |
|
| Q |
608 |
gctagctctgatattagagaatcctccattcttaagggcttcaatgtttttattcatcccccaaagtttctaacagtgaaagaagttttatggaatcctc |
707 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16919424 |
gctagctctgatattagagaattctccattcttaagggtttcaatgttattattcatcccccaaagtttctaacagtgaaagaagttttatggaatcctc |
16919325 |
T |
|
| Q |
708 |
caattactggttggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcaaaaacaattttggccaattcatggg |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16919324 |
caattactggttggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcagaaacaattttggccaattcatggg |
16919225 |
T |
|
| Q |
808 |
atgttttgttgaaggactgagctttggtaattctctctatgctgagctggttggtgctatgagatc-atagagtttgtagattc-aagcattggt-caat |
904 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||| |||| |
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|
| T |
16919224 |
ttgttttgcggaaggcctgagctttggtaattctctctatgctgagctggtaggtgctatgagatcaatagagtttgcagattcaaagcattggtccaat |
16919125 |
T |
|
| Q |
905 |
ttctggctggaaactgattctctg-tggtggttcaagctt |
943 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
16919124 |
ttctggctggaaactgactctctgttggtggttcaagctt |
16919085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 348 - 771
Target Start/End: Complemental strand, 14628045 - 14627622
Alignment:
| Q |
348 |
ttcatctttggtgttggcttgcttcaattctcaaccaatctcttcatctttcagcgttggaagaaatttggggccttagtggaagaggttggtctcctca |
447 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||| |||||| | | ||| || || ||||||||| | | |||| ||||||||||| ||||| |
|
|
| T |
14628045 |
ttcatctttggtgttggttggcttctattctcaaccaatcccttcatttcttagctttagaggaaatttggagtttgagtgcgagaggttggtcacctca |
14627946 |
T |
|
| Q |
448 |
atgtagattaacaattattgctgctatcgttaacatcatttctgctatttggtatgctaggaatcaatgcagattccaaaataggaggattcattggaag |
547 |
Q |
| |
|
|| | |||| | || | | || | | |||| || | |||||||||||| ||||||| ||| | |||||| |||| |||| |||||||||| | |
|
|
| T |
14627945 |
attcacattagctatcacttctacagttattaatattctctctgctatttggaatgctagaaatacttatagattcaaaaacaggaagattcattgggaa |
14627846 |
T |
|
| Q |
548 |
agtgctatatctcatgtcactgtaaatgtttctctgtctgctagcaactctaatttatcagctagctctgatattagagaatcctccattcttaagggct |
647 |
Q |
| |
|
|||| |||||||| ||| ||| ||||||||| ||||||| || || ||||| || |||||||| |||| |||||||||| ||| || || |||| | |
|
|
| T |
14627845 |
agtgtcatatctcaaatcattgttaatgtttctttgtctgcaagtaattctaagttgtcagctagttctggcattagagaattctctatcctaaaggctt |
14627746 |
T |
|
| Q |
648 |
tcaatgtttttattcatcccccaaagtttctaacagtgaaagaagttttatggaatcctccaattactggttggataaaaggaaactgtgatggagcttt |
747 |
Q |
| |
|
| ||||||| ||||| || | |||||| || | |||||| ||||| | | || ||| |||||| | || ||||| ||||| |||||||||||||| || |
|
|
| T |
14627745 |
ttaatgtttcaattcaccctctaaagttgcttatagtgaaggaagtcatctcgagtcccccaatttcaggatggattaaaggtaactgtgatggagcatt |
14627646 |
T |
|
| Q |
748 |
tgcatctggtaaggctgcctgtgg |
771 |
Q |
| |
|
||| | || |||||||| ||||| |
|
|
| T |
14627645 |
tgctgcagggaaggctgcatgtgg |
14627622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 43235331 - 43235389
Alignment:
| Q |
320 |
caccttttctttgattgtccttatgctcttcatctttggtgttggcttgcttcaattct |
378 |
Q |
| |
|
|||||||||||||| ||| |||||| | | ||||||||||| |||||||| |||||||| |
|
|
| T |
43235331 |
caccttttctttgaatgttcttatgttgtccatctttggtgctggcttgcctcaattct |
43235389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 6e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 719 - 943
Target Start/End: Original strand, 11403848 - 11404076
Alignment:
| Q |
719 |
tggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcaaaaacaattttggccaattcatgggatgttttgttg |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
11403848 |
tggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtatattcataaacaattttggccaattcatgggatgttttgctg |
11403947 |
T |
|
| Q |
819 |
aaggactgagctttggtaattctctctatgctgagctggttggtgctatgagatca-tagagtttgtagattc-aagcattggt-caatttctggctgga |
915 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||||||| |||||||| |||||| |
|
|
| T |
11403948 |
aaggcctgagctttggtaattctctctatgctgagttggttggtgctatgagatcagtagagtttgcagattcaaagcattggtccaatttctagctgga |
11404047 |
T |
|
| Q |
916 |
aactgattctct-gtggtggttcaagctt |
943 |
Q |
| |
|
||| |||||| | ||||||||||||||| |
|
|
| T |
11404048 |
aaccgattctttattggtggttcaagctt |
11404076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 834 - 943
Target Start/End: Original strand, 43577680 - 43577793
Alignment:
| Q |
834 |
gtaattctctctatgctgagctggttggtgctatgagatc-atagagtttgtagattc-aagcattggt-caatttctggctggaaactgattctctg-t |
929 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
43577680 |
gtaattctctctatgctgagctggtaggtgctatgagatcaatagagtttgcagattcaaagcattggtccaatttctggctggaaactgattctttgtt |
43577779 |
T |
|
| Q |
930 |
ggtggttcaagctt |
943 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
43577780 |
ggtggttcaagctt |
43577793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 714 - 807
Target Start/End: Original strand, 22051924 - 22052017
Alignment:
| Q |
714 |
ctggttggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcaaaaacaattttggccaattcatggg |
807 |
Q |
| |
|
|||||||||||||||| || |||||||| || |||||||| ||||||||| | ||||||| |||||| | |||||| |||| || |||||||| |
|
|
| T |
22051924 |
ctggttggataaaagggaattgtgatggcgcctttgcatcaggtaaggcttcttgtggtgctatttttagaaacaagcttggtcagttcatggg |
22052017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 704 - 874
Target Start/End: Complemental strand, 31437999 - 31437829
Alignment:
| Q |
704 |
cctccaattactggttggataaaaggaaactgtgatggagcttttgcatctggtaaggctgcctgtggtggtattttcaaaaacaattttggccaattca |
803 |
Q |
| |
|
|||| |||| || |||||||||| || || ||||||||||| |||||||||||||||||||| ||||||| || || | |||||| ||||| ||||| | |
|
|
| T |
31437999 |
cctcaaattgcttgttggataaagggtaattgtgatggagcatttgcatctggtaaggctgcttgtggtgaaatctttagaaacaagtttggtcaattta |
31437900 |
T |
|
| Q |
804 |
tgggatgttttgttgaaggactgagctttggtaattctctctatgctgagctggttggtgctatgagatca |
874 |
Q |
| |
|
||||| ||||| ||||| |||| |||||| || ||||||| |||| |||| |||||| ||||||||| |
|
|
| T |
31437899 |
tgggagcttttgctgaagttctgaactttggaaactctctctttgctaagcttaatggtgccatgagatca |
31437829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 348 - 771
Target Start/End: Original strand, 189338 - 189761
Alignment:
| Q |
348 |
ttcatctttggtgttggcttgcttcaattctcaaccaatctcttcatctttcagcgttggaagaaatttggggccttagtggaagaggttggtctcctca |
447 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||||||| |||||| | | ||| || || ||||||||| | | |||| ||||||||||| ||||| |
|
|
| T |
189338 |
ttcatctttggtgttggttggcttctattctcaaccaatcccttcatttcttagctttagaggaaatttggagtttgagtgcgagaggttggtcacctca |
189437 |
T |
|
| Q |
448 |
atgtagattaacaattattgctgctatcgttaacatcatttctgctatttggtatgctaggaatcaatgcagattccaaaataggaggattcattggaag |
547 |
Q |
| |
|
|| | |||| | || | | || | | |||| || | |||||||||||| ||||||| ||| | |||||| |||| |||| |||||||||| | |
|
|
| T |
189438 |
attcacattagctatcacttctacagttattaatattctctctgctatttggaatgctagaaatacttatagattcaaaaacaggaagattcattgggaa |
189537 |
T |
|
| Q |
548 |
agtgctatatctcatgtcactgtaaatgtttctctgtctgctagcaactctaatttatcagctagctctgatattagagaatcctccattcttaagggct |
647 |
Q |
| |
|
|||| |||||||| ||| ||| ||||||||| ||||||| || || ||||| || |||||||| |||| |||||||||| ||| || || |||| | |
|
|
| T |
189538 |
agtgtcatatctcaaatcattgttaatgtttctttgtctgcaagtaattctaagttgtcagctagttctggcattagagaattctctatcctaaaggctt |
189637 |
T |
|
| Q |
648 |
tcaatgtttttattcatcccccaaagtttctaacagtgaaagaagttttatggaatcctccaattactggttggataaaaggaaactgtgatggagcttt |
747 |
Q |
| |
|
| ||||||| ||||| || | |||||| || | |||||| ||||| | | || ||| |||||| | || ||||| ||||| |||||||||||||| || |
|
|
| T |
189638 |
ttaatgtttcaattcaccctctaaagttgcttatagtgaaggaagtcatctcgagtcccccaatttcaggatggattaaaggtaactgtgatggagcatt |
189737 |
T |
|
| Q |
748 |
tgcatctggtaaggctgcctgtgg |
771 |
Q |
| |
|
||| | || |||||||| ||||| |
|
|
| T |
189738 |
tgctgcagggaaggctgcatgtgg |
189761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 903 - 943
Target Start/End: Complemental strand, 33930962 - 33930921
Alignment:
| Q |
903 |
atttctggctggaaactgattctctg-tggtggttcaagctt |
943 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33930962 |
atttctggctggaaactgattctctgttggtggttcaagctt |
33930921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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