View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5977-Insertion-3 (Length: 891)

Name: NF5977-Insertion-3
Description: NF5977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5977-Insertion-3
NF5977-Insertion-3
[»] chr2 (20 HSPs)
chr2 (414-891)||(16153961-16154437)
chr2 (414-877)||(16174889-16175352)
chr2 (414-883)||(16145367-16145832)
chr2 (9-277)||(16154488-16154757)
chr2 (424-813)||(7819461-7819860)
chr2 (577-773)||(17707260-17707454)
chr2 (111-276)||(16145886-16146048)
chr2 (8-103)||(16146029-16146126)
chr2 (577-773)||(17649876-17650075)
chr2 (111-203)||(16176309-16176400)
chr2 (9-103)||(16176381-16176477)
chr2 (147-277)||(16176009-16176131)
chr2 (719-773)||(39809679-39809733)
chr2 (147-245)||(16175958-16176053)
chr2 (147-203)||(16145871-16145929)
chr2 (147-203)||(16176189-16176241)
chr2 (219-276)||(16175486-16175544)
chr2 (147-183)||(16175903-16175939)
chr2 (515-556)||(2657216-2657257)
chr2 (147-184)||(16175492-16175529)
[»] scaffold0163 (1 HSPs)
scaffold0163 (586-770)||(14481-14672)
[»] chr7 (11 HSPs)
chr7 (475-760)||(30821358-30821649)
chr7 (420-760)||(32759864-32760211)
chr7 (476-760)||(20443498-20443789)
chr7 (470-760)||(3809089-3809380)
chr7 (592-773)||(8631961-8632150)
chr7 (510-558)||(12499246-12499294)
chr7 (510-545)||(2960310-2960345)
chr7 (781-868)||(3809394-3809480)
chr7 (586-681)||(39961781-39961875)
chr7 (679-773)||(24457493-24457587)
chr7 (510-548)||(30391981-30392019)
[»] chr1 (9 HSPs)
chr1 (472-773)||(25967913-25968216)
chr1 (474-773)||(25963788-25964098)
chr1 (591-813)||(19568659-19568886)
chr1 (628-681)||(1402528-1402581)
chr1 (719-772)||(40966136-40966189)
chr1 (719-763)||(7919783-7919827)
chr1 (802-876)||(31107688-31107763)
chr1 (586-633)||(51946563-51946610)
chr1 (619-676)||(26583520-26583577)
[»] chr6 (4 HSPs)
chr6 (523-818)||(20725134-20725435)
chr6 (586-676)||(17539067-17539157)
chr6 (719-772)||(32618918-32618971)
chr6 (719-773)||(14522932-14522986)
[»] chr4 (6 HSPs)
chr4 (472-818)||(19444402-19444749)
chr4 (572-685)||(44494470-44494587)
chr4 (588-709)||(27673903-27674033)
chr4 (688-817)||(23997910-23998040)
chr4 (619-685)||(1310029-1310095)
chr4 (606-685)||(32997989-32998068)
[»] chr8 (3 HSPs)
chr8 (491-676)||(28971056-28971240)
chr8 (676-773)||(28970933-28971030)
chr8 (676-740)||(42987671-42987735)
[»] chr5 (4 HSPs)
chr5 (534-737)||(37699523-37699731)
chr5 (555-681)||(5415157-5415283)
chr5 (688-758)||(6311089-6311159)
chr5 (688-754)||(38309887-38309953)
[»] chr3 (6 HSPs)
chr3 (713-766)||(20825538-20825591)
chr3 (593-674)||(39961626-39961707)
chr3 (688-772)||(39961488-39961572)
chr3 (577-685)||(49016818-49016926)
chr3 (420-545)||(9826380-9826507)
chr3 (722-773)||(34619234-34619285)
[»] scaffold0229 (1 HSPs)
scaffold0229 (628-681)||(15777-15830)


Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 414 - 891
Target Start/End: Complemental strand, 16154437 - 16153961
Alignment:
Q  414 ttaagaatggcaattgaaaccaagtctaatgggcacccgcaaaaatacctaccatagacgggtaaatacccgcattgtgggtatgggcctggactcgggt 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16154437 ttaagaatggcaattgaaaccaagtctaatgggcacccgcaaaaatacctaccatagacgggtaaatacccgcattgtgggtatgggcctggactcggat 16154338  T
Q  514 gattacctgcaaatttgaatgggtatgggcacgggtacggacactcaagtacctaccccgccgcatgcccgaacattatatagactatatcaataatttt 613  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16154337 gattacctgcaaatttgaatgggtatgggcacgggtacgggcactcaagtacctaccccgccgcatgcccgaacattatatagactatatcaataatttt 16154238  T
Q  614 atttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgtattttatatggtttttatttggctaaataatatcatg 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16154237 atttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgtattttatatggtttttatttggctaaataatatcatg 16154138  T
Q  714 cgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgatannnnnnnatttcttatctttttgttgtaaaagtgcgggta 813  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  16154137 cgtactattttatatgttgatttaaaatattttagatcatattttaattatgttgtgatatttttttatttcttatctttttgttgtaaaagtgcgggta 16154038  T
Q  814 atgggacacgagtatgagctcttaaatacctatagggtatggagacggacaccaaacttgttgtcgagagtgtatggg 891  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  16154037 at-ggacacgagtatgagctcttaaatacctatagggtatggagacggacaccaaacttgttatccagagtgtatggg 16153961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 414 - 877
Target Start/End: Complemental strand, 16175352 - 16174889
Alignment:
Q  414 ttaagaatggcaattgaaaccaagtctaatgggcacccgcaaaaatacctaccatagacgggtaaatacccgcattgtgggtatgggcctggactcgggt 513  Q
    |||||||| ||||||| ||| ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  16175352 ttaagaattgcaattggaactaagtctaatcggcacccacaaaaatacctacgatagacgggtaaatacccgcattgtaggtatgggtctggattcgggt 16175253  T
Q  514 gattacctgcaaatttgaatgggtatgggcacgggtacggacactcaagtacctaccccgccgcatgcccgaacattatatagactatatcaataatttt 613  Q
     |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16175252 aattacctgtaaatttgaatgggtatgggcgcgggtacggacactctagtacctaccccgccgcatgcccgaacattctatagactatatcaataatttt 16175153  T
Q  614 atttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgtatttt-------atatggtttttatttggctaaataa 706  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||    
T  16175152 atttaatattaaagttagttaattaatctcaagtctttgttatttattgtaatatgcacttgtattttatattttatatgatttttatttggctaaataa 16175053  T
Q  707 tatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata-nnnnnnnatttcttatctttttgttgtaaaag 805  Q
    || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||        ||||  |||||||||||||||||||    
T  16175052 taccatgcgtaatattttatatgttgatttaaaatatttcatatcatattttaattatgttgtgatatttttcttatttgctatctttttgttgtaaaag 16174953  T
Q  806 tgcgggtaatgggacacgagtatgagctcttaaatacctatagggtatggagacggacaccaaacttgttgt 877  Q
    || ||||||| |||   |  ||||||||||||||||||        ||||||||||||||||||||||||||    
T  16174952 tgtgggtaat-ggatgtggatatgagctcttaaatacc-------catggagacggacaccaaacttgttgt 16174889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 414 - 883
Target Start/End: Complemental strand, 16145832 - 16145367
Alignment:
Q  414 ttaagaatggcaattgaaaccaagtctaatgggcacccgcaaaaatacctaccatagacgggtaaatacccgcattgtgggtatgggcctggactcgggt 513  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||| ||   ||||||| ||||||||  |||||||||||||||||||||||||||||    
T  16145832 ttaagaatggcaattggaaccaagtctaatgggcactcgcaaaaatatcttggatagacgcgtaaatac--gcattgtgggtatgggcctggactcgggt 16145735  T
Q  514 gattacctgcaaatttgaatgggtatgggcacgggtacggacactcaagtacctaccccgccgcatgcccgaacattatatagactatatcaataatttt 613  Q
          || ||||||||||||| |||| || ||||||||| ||||| |||||||||||| ||||| ||||  ||||||||||||||||||||||||||||    
T  16145734 ------ctacaaatttgaatggttatgagcgcgggtacgggcactctagtacctaccccaccgcaggccctgacattatatagactatatcaataatttt 16145641  T
Q  614 atttgatattaaagttagttaattaatcacaattc-tttgttatttattgtaatatgcacttg-------tattttatatggtttttatttggctaaata 705  Q
    |||| ||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||       ||||||||||||||||||||||||    ||    
T  16145640 atttaatattaaagttagttaattaatctcaagtcttttgttatttattgtaatatgcacttgtattttatattttatatggtttttatttggc----ta 16145545  T
Q  706 atatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata-nnnnnnnatttcttatctttttgttgtaaaa 804  Q
    |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||        |||| ||||||||||||| |||||    
T  16145544 atatcatgagtaatattttatatgttgatttaaaatatttcaaatcatattttaattatgttgtgatatttttgctatttgttatctttttgttataaaa 16145445  T
Q  805 gtgcgggtaatgggacacgagtatgagctcttaaatacctatagggtatggagacggacaccaaacttgttgtcgagag 883  Q
    ||||||| ||| | || || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  16145444 gtgcgggcaat-gaacgcgggtatgggctcttaaatacccatagggtatggagacggacaccaaacttgttgtctagag 16145367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 16154757 - 16154488
Alignment:
Q  9 aaaaatatgttggtttgttattcatattgagtgtctatttatcaattattgagattaggataggcatgaacaattaaataatcttttacttaatgtaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16154757 aaaaatatgttggtttgttattcatattgagtgtctatttatcaattattgagattaggataggcatgaacaattaaataatcttttacttaatgtaacc 16154658  T
Q  109 aaaaataatcttttacttaatgatttgcaataaataatgtc-aaaagaaagtcatcaaacatggacaaattattattgattatttcaaaacaagatnnnn 207  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||        
T  16154657 aaaaataatcttttacttaatgattcgcaataaataatgtcaaaaagaaagtcaacaaacatggacaaattattattgattatttcaaaacaagataaaa 16154558  T
Q  208 nnntatataacaaagcaaacaaacaagtcaagagaaatacatcaaacatggacaaatattattattattt 277  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16154557 atatatataacaaagcaaacaaacaagtcaagagaaatacatcaaacatggacaaatataattattattt 16154488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 424 - 813
Target Start/End: Complemental strand, 7819860 - 7819461
Alignment:
Q  424 caattgaaaccaagtctaatgggcacccgcaaaaa-tacctaccatagacgggtaaatacccgcattgtggg-tatgggcctggactcgggtgattacct 521  Q
    |||||| | ||||||| |||||||||||||||||| |||| |  || | |||| |||||||| |||||| || |||||| |||| | | ||| |||||||    
T  7819860 caattggacccaagtccaatgggcacccgcaaaaaatacccatgatgggcggggaaatacccacattgttggatatgggtctgggcacaggtaattacct 7819761  T
Q  522 gcaaatttgaatgggtatgggcacgggtacggacactcaagtacctaccccgccgcatgcccgaacattatatagactatatcaataattttatttgata 621  Q
    |||||||||||||||||||||  |||||| || | ||| |||||| |||||||| |||||||| |||||||||| |||||| |||||||||||||| |||    
T  7819760 gcaaatttgaatgggtatgggtgcgggtatgggctctctagtacccaccccgccccatgcccgcacattatatatactataccaataattttattt-ata 7819662  T
Q  622 ttaaagttagttaattaatcacaattctttgttatttattgtaatatgcac-------ttgtattttatatggtttttatttggctaaataatatcatgc 714  Q
    ||||| ||||||||||||||  || |||||| |||||||||||||||||||       || ||||||| ||| |||||||||||||||||||||| ||||    
T  7819661 ttaaatttagttaattaatccaaagtctttgatatttattgtaatatgcacttattttttatattttagatgttttttatttggctaaataatatgatgc 7819562  T
Q  715 gtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata--nnnnnnnatttcttatctttttgttgtaaaagtgcgggt 812  Q
    ||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||         |||| ||||||||||||||| |||||||||||    
T  7819561 gtaatattttatatgttgatttagaatatttcatatcatattttaattatgttgtgatattttttgttatttattatctttttgttgtgaaagtgcgggt 7819462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 577 - 773
Target Start/End: Original strand, 17707260 - 17707454
Alignment:
Q  577 catgcccgaacattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgt 676  Q
    |||||||| |||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||| || ||| | |||||||||||||| ||||||    
T  17707260 catgcccgcacattatatagactatatcaataattttatgtaatactaaagttaattaattaatcacaagtcattgatctttattgtaatatgtacttgt 17707359  T
Q  677 attttatatggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata 773  Q
     ||||||||  |||  || ||  | |||||||| |||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  17707360 tttttatat--tttagatgtgttttaataatatgatgcttaatattttatatgttgatttaagagatttcagatcatattttaattatgttgtgata 17707454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 111 - 276
Target Start/End: Complemental strand, 16146048 - 16145886
Alignment:
Q  111 aaataatcttttacttaatgatttgcaataaataatgtcaaaagaaagtcatcaaacatggacaaattattattgattatttcaaaacaagatnnnnnnn 210  Q
    |||| |||||||| ||||||||| |||||||||||||| |||||||| |  ||||||||||||||||||||||| ||||||||||||||||||           
T  16146048 aaatcatcttttatttaatgattcgcaataaataatgttaaaagaaattagtcaaacatggacaaattattatt-attatttcaaaacaagataaaaa-- 16145952  T
Q  211 tatataacaaagcaaacaaacaagtcaagagaaatacatcaaacatggacaaa-tattattattatt 276  Q
     | |||| |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  16145951 -aaataagaaagcaaacaaacaagtcaaaagaaattcatcaaacatggacaaattattattattatt 16145886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 16146126 - 16146029
Alignment:
Q  8 aaaaaatatgttggtttgttattc--atattgagtgtctatttatcaattattgagattaggataggcatgaacaattaaataatcttttacttaatg 103  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  16146126 aaaaaatatgttggtctgttattccaatattgagtgtctatttatcaattattgagattaggataggcatgaacaattaaatcatcttttatttaatg 16146029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 577 - 773
Target Start/End: Original strand, 17649876 - 17650075
Alignment:
Q  577 catgcccgaacattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgt 676  Q
    |||||||| |||||||||||| | |||||||   ||||| | ||| ||| ||| |||||||||||| || || ||| |||||||||||||||||||||||    
T  17649876 catgcccgcacattatatagattgtatcaat---tttatgtaatactaa-gtttgttaattaatcataagtcattgatatttattgtaatatgcacttgt 17649971  T
Q  677 attttatat-------ggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgt 769  Q
     ||||||||       | ||||||||| |||||||||||| ||||||| ||||||||||||| |||||| | ||| |||||||||||||||||||||| |    
T  17649972 tttttatattttagatgttttttatttagctaaataatatgatgcgtaatattttatatgtttatttaagagattccagatcatattttaattatgttat 17650071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 16176400 - 16176309
Alignment:
Q  111 aaataatcttttacttaatgatttgcaataaataatgtcaaaagaaagtcatcaaacatggacaaattattattgattatttcaaaacaagat 203  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  16176400 aaataatcttttatttaatgattcgcaataaataaggtcaaaagaaattcatcaaacatggacaaattattatt-attatttcaaaacaagat 16176309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 16176477 - 16176381
Alignment:
Q  9 aaaaatatgttggtttgttattc--atattgagtgtctatttatcaattattgagattaggataggcatgaacaattaaataatcttttacttaatg 103  Q
    |||||||| ||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  16176477 aaaaatattttggtttgttattcccatattcagtgtctatttatgaattattgagattaggataagcatgaacaattaaataatcttttatttaatg 16176381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 16176131 - 16176009
Alignment:
Q  147 gtcaaaagaaagtcatcaaacatggacaaattattattgattatttcaaaacaagatnnnnnnntatataacaaagcaaacaaacaagtcaagagaaata 246  Q
    ||||||||||| ||||||||||||||||||||||||||    ||||||||||||||         | | || ||||||| |||||||||||| ||||||     
T  16176131 gtcaaaagaaattcatcaaacatggacaaattattatt----atttcaaaacaagaaaaa-----aaaaaaaaaagcaatcaaacaagtcaaaagaaatt 16176041  T
Q  247 catcaaacatggacaaat-attattattattt 277  Q
    |||||||||||||||||| |||||||||||||    
T  16176040 catcaaacatggacaaatcattattattattt 16176009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 719 - 773
Target Start/End: Original strand, 39809679 - 39809733
Alignment:
Q  719 tattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata 773  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||    
T  39809679 tattttataagttgatttaaaatattttagatcatattttaattaagttgtgata 39809733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 16176053 - 16175958
Alignment:
Q  147 gtcaaaagaaagtcatcaaacatggacaaattattattgattatttcaaaacaagatnnnnnnntatataacaaagcaaacaaacaagtcaagagaaat 245  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||        | |||| |||||||||||||||||||| ||||||    
T  16176053 gtcaaaagaaattcatcaaacatggacaaatcattatt-attatttcaaaacaagataaaaaa--aaataagaaagcaaacaaacaagtcaaaagaaat 16175958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 16145929 - 16145871
Alignment:
Q  147 gtcaaaagaaagtcatcaaacatggacaaattattat--tgattatttcaaaacaagat 203  Q
    ||||||||||| |||||||||||||||||||||||||  | ||||||||||||||||||    
T  16145929 gtcaaaagaaattcatcaaacatggacaaattattattattattatttcaaaacaagat 16145871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 16176241 - 16176189
Alignment:
Q  147 gtcaaaagaaagtcatcaaacatggacaaattattattgattatttcaaaacaagat 203  Q
    ||||||||||| |||||||||||||||||||||||    ||||||||||||||||||    
T  16176241 gtcaaaagaaattcatcaaacatggacaaattatt----attatttcaaaacaagat 16176189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 16175544 - 16175486
Alignment:
Q  219 aaagcaaacaaacaagtcaagagaaatacatcaaacatggacaaa-tattattattatt 276  Q
    |||||||||||| ||||||| |||||  ||||||||||||||||| |||||||||||||    
T  16175544 aaagcaaacaaataagtcaaaagaaactcatcaaacatggacaaactattattattatt 16175486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 16175939 - 16175903
Alignment:
Q  147 gtcaaaagaaagtcatcaaacatggacaaattattat 183  Q
    ||||||||||| |||||||||||||||||||||||||    
T  16175939 gtcaaaagaaattcatcaaacatggacaaattattat 16175903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 2657257 - 2657216
Alignment:
Q  515 attacctgcaaatttgaatgggtatgggcacgggtacggaca 556  Q
    |||||||||||| |||||||||||||| |||||||| |||||    
T  2657257 attacctgcaaaattgaatgggtatggacacgggtatggaca 2657216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 16175529 - 16175492
Alignment:
Q  147 gtcaaaagaaagtcatcaaacatggacaaattattatt 184  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  16175529 gtcaaaagaaactcatcaaacatggacaaactattatt 16175492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 586 - 770
Target Start/End: Complemental strand, 14672 - 14481
Alignment:
Q  586 acattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgt--------a 677  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||  || |||||| |||||||||||||||||||||||        |    
T  14672 acattatatagactataccaataattttattt-atattaaatttagttaattaatcctaagtctttgatatttattgtaatatgcacttgtttttttata 14574  T
Q  678 ttttatatggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtg 770  Q
    ||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  14573 ttttagatgctttttatttggctaaataatatgatgcgtaatattttatatgttgatttagaaaatttcatatcatattttaattatgttgtg 14481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 3e-50; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 475 - 760
Target Start/End: Original strand, 30821358 - 30821649
Alignment:
Q  475 gtaaatacccgcattgt-gggtatgggcctggactcgggtgattacctgcaaatttgaatgggtatgggcacgggtacggacactcaagtacctaccccg 573  Q
    ||||||||||||||||| |||||||||| ||| | ||||| | ||||  |||||||||| |||||||||  ||||||||| ||||| || ||| ||||||    
T  30821358 gtaaatacccgcattgttgggtatgggcatgggcacgggtaactacccacaaatttgaacgggtatgggtgcgggtacgggcactctagcacccaccccg 30821457  T
Q  574 ccgcatgcccgaacattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcact 673  Q
    || | |||||| |||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||  || | |||| ||||||||||||||||||||    
T  30821458 ccccctgcccgcacattatatatactataccaataattttattt-atattaaatttagttaattaatctaaagtatttgatatttattgtaatatgcact 30821556  T
Q  674 tgtattttatat------ggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaa 760  Q
    | | ||||||||       | ||||||||||||||||||||| ||| ||  ||||| ||||||||||||| ||||||||| ||  ||||||||    
T  30821557 tattttttatattttaaatgcttttatttggctaaataatatgatgtgtgatatttgatatgttgatttataatatttcatattgtattttaa 30821649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 420 - 760
Target Start/End: Original strand, 32759864 - 32760211
Alignment:
Q  420 atggcaattgaaaccaagtctaatgggcacccgcaaaaa-tacctaccatagacgggtaaatacccgcattgt-gggtatgggcctggactcgggtgatt 517  Q
    |||||||||| | ||||| | | |||||||||||||||| |||| |  || | || |||||||||| |||||| |||||||||| ||| | ||||| |||    
T  32759864 atggcaattggacccaagcccagtgggcacccgcaaaaaatacccatgatgggcgagtaaatacccacattgttgggtatgggcatgggcacgggtaatt 32759963  T
Q  518 acctgcaaatttgaatgggtatgggcacgggtacggacactcaagtacctaccccgccgcatgcccgaacattatatagactatatcaataattttattt 617  Q
    |||  |||||||||| |||||||||  ||||||||| || || || ||| |||||||| | |||||| |||||||||| |||||| ||||||||||||||    
T  32759964 acccacaaatttgaacgggtatgggtgcgggtacgggcattctagcacccaccccgccccctgcccgcacattatatatactataccaataattttattt 32760063  T
Q  618 gatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgtattttatat------ggtttttatttggctaaataatatca 711  Q
     |||||||| ||||||||||||||  || | |||| ||||||||||||||||||||| | ||||||||       | ||||||||||||||||||||| |    
T  32760064 -atattaaatttagttaattaatctaaagtatttgatatttattgtaatatgcacttattttttatatttaaaatgcttttatttggctaaataatatga 32760162  T
Q  712 tgcgtactattttatatgttgatttaaaatatttcagatcatattttaa 760  Q
    || ||  ||||| ||||||||||||| ||||||||| ||  ||||||||    
T  32760163 tgtgtgatatttgatatgttgatttataatatttcatattgtattttaa 32760211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 476 - 760
Target Start/End: Complemental strand, 20443789 - 20443498
Alignment:
Q  476 taaatacccgcattgt-gggtatgggcctggactcgggtgattacctgcaaatttgaatgggtatgggcacgggtacggacactcaagtacctaccccgc 574  Q
    ||||||||| |||||| |||||||||| ||| | ||||| ||||||  |||||||||| |||||||||  ||||||||| || || || ||| |||||||    
T  20443789 taaataccctcattgttgggtatgggcatgggcacgggtaattacccacaaatttgaacgggtatgggtgcgggtacggtcattctagcacccaccccgc 20443690  T
Q  575 cgcatgcccgaacattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcactt 674  Q
    | | |||||| |||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||  || | |||| |||||||||||||||||||||    
T  20443689 cccctgcccgcacattatatatactataccaataattttattt-atattaaatttagttaattaatctaaagtatttgatatttattgtaatatgcactt 20443591  T
Q  675 -gtattttatat------ggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaa 760  Q
      | ||||||||       | ||||||||||||||||||||| ||| |||  |||| ||||||||||||| ||||||||| ||| ||||||||    
T  20443590 atttttttatattttaaatgcttttatttggctaaataatatgatgtgtaaaatttgatatgttgatttagaatatttcatatcgtattttaa 20443498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 470 - 760
Target Start/End: Original strand, 3809089 - 3809380
Alignment:
Q  470 gacgggtaaatacccgcattgtggg-tatgggcctggactcgggtgattacctgcaaatttgaatgggtatgggcacgggtacggacactcaagtaccta 568  Q
    ||||| |||||||||||||||| |  ||||||| ||| |  |||| |||| |  ||||||| || ||||||||   | ||||||| ||||| || ||| |    
T  3809089 gacggataaatacccgcattgttgaatatgggcatgggcatgggtaattatccacaaatttaaacgggtatggatgcaggtacgggcactctagcaccca 3809188  T
Q  569 ccccgccgcatgcccgaacattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatat 668  Q
    ||| ||| | ||||||||||||||||| |||||| |||||||||||||| |||||||| |||||||||||     || | |||| |||||||||||||||    
T  3809189 ccctgccccctgcccgaacattatatatactataccaataattttattt-atattaaatttagttaatta-----aagtatttgatatttattgtaatat 3809282  T
Q  669 gcacttgtattttatat------ggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaa 760  Q
    |||||| | ||||||||       | ||||||||||||||||||||| ||| ||| ||||| ||||||||||||| ||||||||| ||| ||||||||    
T  3809283 gcacttattttttatattttaaatgcttttatttggctaaataatatgatgtgtaatatttgatatgttgatttagaatatttcatatcgtattttaa 3809380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 592 - 773
Target Start/End: Complemental strand, 8632150 - 8631961
Alignment:
Q  592 tatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgt---------atttta 682  Q
    |||||| ||||  ||||||||||||| ||| |||||||||||||||| || ||  |||||| ||||||||||||  |||||||||         ||||||    
T  8632150 tatagagtatagaaataattttatttaataataaagttagttaattattcccatatctttgatatttattgtaacttgcacttgttttttttatatttta 8632051  T
Q  683 tatggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata 773  Q
     ||| || || |||||||||||||||| |||| || ||||||| |||||||||||||| | || |||||||||||||||||| ||||||||    
T  8632050 gatgcttcttgtttggctaaataatatgatgcataatattttacatgttgatttaaaagaatt-agatcatattttaattatattgtgata 8631961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 510 - 558
Target Start/End: Original strand, 12499246 - 12499294
Alignment:
Q  510 gggtgattacctgcaaatttgaatgggtatgggcacgggtacggacact 558  Q
    |||| |||||| ||||||||| ||||||||||||||||||| |||||||    
T  12499246 gggtaattacccgcaaatttgtatgggtatgggcacgggtatggacact 12499294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 545
Target Start/End: Complemental strand, 2960345 - 2960310
Alignment:
Q  510 gggtgattacctgcaaatttgaatgggtatgggcac 545  Q
    |||| |||||||||||||||||||||||||||||||    
T  2960345 gggtaattacctgcaaatttgaatgggtatgggcac 2960310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 781 - 868
Target Start/End: Original strand, 3809394 - 3809480
Alignment:
Q  781 atttcttatctttttgttgtaaaagtgcgggtaatgggacacgagtatgagctcttaaatacctatagggtatggagacggacaccaa 868  Q
    |||| ||||||||||||||| |||||||||||||||||   || ||| | || |||||||||| || |||||||| ||||| ||||||    
T  3809394 atttattatctttttgttgtgaaagtgcgggtaatggg-ttcgggtacgggcacttaaatacccatcgggtatggggacgggcaccaa 3809480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 681
Target Start/End: Complemental strand, 39961875 - 39961781
Alignment:
Q  586 acattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgtatttt 681  Q
    ||||| ||||||||||| |||||||||||| | | | |||| ||||||||||||||  || |||||  ||||| |||||| |||||||||| ||||    
T  39961875 acattttatagactataccaataattttatgtaacactaaacttagttaattaatcctaaatcttt-atatttgttgtaacatgcacttgtttttt 39961781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 679 - 773
Target Start/End: Complemental strand, 24457587 - 24457493
Alignment:
Q  679 tttatatggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata 773  Q
    |||| ||| |||||| |||| |||||| ||| ||| ||  || |||||| || ||||| |||||||| ||||||||||||||||| ||| |||||    
T  24457587 tttagatgctttttagttggataaatactatgatgggtgataatttataagtagatttgaaatattttagatcatattttaattacgttatgata 24457493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 510 - 548
Target Start/End: Complemental strand, 30392019 - 30391981
Alignment:
Q  510 gggtgattacctgcaaatttgaatgggtatgggcacggg 548  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  30392019 gggtaattacctgcaaatttgaatgagtatgggcacggg 30391981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 5e-49; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 472 - 773
Target Start/End: Original strand, 25967913 - 25968216
Alignment:
Q  472 cgggtaaatacccgcattgt-gggtatgggcctggactcgggtgattacctgcaaatttgaatgggtatgggcacgggtacggacactcaagtacctacc 570  Q
    |||||||||||| ||| ||| |||||||||||||| | ||||| ||| || ||||||||||| |||||||||   ||||| || ||||| |||  |        
T  25967913 cgggtaaatacctgcagtgttgggtatgggcctgggcacgggtaattgcccgcaaatttgaacgggtatgggtgtgggtatgggcactctagtgtca--- 25968009  T
Q  571 ccgccgcatgcccgaacattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgc 670  Q
    ||||| |||||||  ||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||   || |||||| |||||||||||||||||    
T  25968010 ccgccccatgcccatacattatatagactataccaataattttattt-atattaaatatagttaattaatattaagtctttgatatttattgtaatatgc 25968108  T
Q  671 acttg------tattttatatggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattat 764  Q
    |||||      ||||||| ||| ||||||||||| |||||||||| ||| ||| || ||||||||||||||||  |||||||| ||||||||||||||||    
T  25968109 acttgtttttatattttagatgttttttatttggataaataatatgatgtgtaata-tttatatgttgatttatcatatttcatatcatattttaattat 25968207  T
Q  765 gttgtgata 773  Q
    |||||||||    
T  25968208 gttgtgata 25968216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 474 - 773
Target Start/End: Complemental strand, 25964098 - 25963788
Alignment:
Q  474 ggtaaatacccgcattgtgg-gtatgggcctggactcgggtgattacctgcaaatttgaatgggtatgggcacgggtacggacactcaagtacctacccc 572  Q
    ||||||||||| |||||| | ||||||||| || ||||||| ||||| || ||||||||| |||||||| | | ||||  | ||||| | || | ||| |    
T  25964098 ggtaaatacccacattgttgtgtatgggccagggctcgggtaattacttgaaaatttgaacgggtatggacgcaggtattggcactctaatatccacctc 25963999  T
Q  573 gccgcatgcccgaacattatatagactatatcaataattttatttgatattaaagttagtt----aattaatcacaattctttgttatttattgtaatat 668  Q
     || |||||||| |||||||||||| ||||||||||||||||| | |||||||||| ||||    |||||||   || |||||| || ||||||||||||    
T  25963998 accccatgcccgcacattatatagattatatcaataattttatgtaatattaaagtaagtttgttaattaatattaagtctttgatagttattgtaatat 25963899  T
Q  669 gcacttgtattttatat-------ggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaat 761  Q
    |||||||| ||||||||       | |||||||||||||||||||| | ||||||| ||||| ||||||||| |||||||||| || |||||||||||||    
T  25963898 gcacttgttttttatattttagatgctttttatttggctaaataatttgatgcgtaatatttcatatgttga-ttaaaatattacatatcatattttaat 25963800  T
Q  762 tatgttgtgata 773  Q
    | ||||||||||    
T  25963799 tttgttgtgata 25963788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 591 - 813
Target Start/End: Original strand, 19568659 - 19568886
Alignment:
Q  591 atatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgtattttatatggt-- 688  Q
    ||||| ||||||  ||||||||||||| |||||||| |||||||||||||   || |||||| |||||||   ||||||||||| | ||||||||  |      
T  19568659 atataaactatactaataattttattt-atattaaatttagttaattaattcaaagtctttgatatttat---aatatgcacttattttttatattttag 19568754  T
Q  689 -----ttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata--nnnnnnna 781  Q
         ||||||||||||||||||||| ||||||  || |||||||||||||||| ||||||||| |||||||||||||||||||||||||         |    
T  19568755 atactttttatttggctaaataatatgatgcgtgatagtttatatgttgatttagaatatttcatatcatattttaattatgttgtgatattttttgtta 19568854  T
Q  782 tttcttatctttttgttgtaaaagtgcgggta 813  Q
    ||| ||||||||||||||||||||||||||||    
T  19568855 tttgttatctttttgttgtaaaagtgcgggta 19568886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 681
Target Start/End: Complemental strand, 1402581 - 1402528
Alignment:
Q  628 ttagttaattaatcacaattctttgttatttattgtaatatgcacttgtatttt 681  Q
    ||||||||||||||  || |||||| ||||||||||||||||||||||| ||||    
T  1402581 ttagttaattaatccgaagtctttgatatttattgtaatatgcacttgtttttt 1402528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 40966136 - 40966189
Alignment:
Q  719 tattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgat 772  Q
    ||||||||| |||||||||||| |||| |||| ||| |||||||||||||||||    
T  40966136 tattttataagttgatttaaaagattttagattatactttaattatgttgtgat 40966189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 719 - 763
Target Start/End: Complemental strand, 7919827 - 7919783
Alignment:
Q  719 tattttatatgttgatttaaaatatttcagatcatattttaatta 763  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||    
T  7919827 tattttataagttgatttaaaatattttagatcattttttaatta 7919783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 876
Target Start/End: Original strand, 31107688 - 31107763
Alignment:
Q  802 aaagtgcgggtaatggg-acacgagtatgagctcttaaatacctatagggtatggagacggacaccaaacttgttg 876  Q
    |||||||| |||||||  ||||| |||||||| ||||| |||| |||||||||||||| || ||||||| ||||||    
T  31107688 aaagtgcgagtaatggatacacgggtatgagcacttaagtacccatagggtatggagaagggcaccaaatttgttg 31107763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 633
Target Start/End: Original strand, 51946563 - 51946610
Alignment:
Q  586 acattatatagactatatcaataattttatttgatattaaagttagtt 633  Q
    |||||||||| |||||| |||||||||||| |||||||||| ||||||    
T  51946563 acattatatatactataacaataattttatgtgatattaaaattagtt 51946610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 676
Target Start/End: Original strand, 26583520 - 26583577
Alignment:
Q  619 atattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgt 676  Q
    |||||||| ||||||||||||||  || |||||  |||||||||| ||||||||||||    
T  26583520 atattaaaattagttaattaatcttaagtctttaatatttattgttatatgcacttgt 26583577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 523 - 818
Target Start/End: Complemental strand, 20725435 - 20725134
Alignment:
Q  523 caaatttgaatgggtatgggcacgggtacggacactcaagtacctaccccgccgcatgcccgaacattatatagactatatcaataattttatttgatat 622  Q
    |||||||||| |||||||||  ||||||  | ||||| ||| || ||||| || |||||  | ||||||||||||| || | ||||||||||||| ||||    
T  20725435 caaatttgaacgggtatgggtgcgggtattggcactctagtgcccaccccaccccatgcttgcacattatatagaccatgtgaataattttattt-atat 20725337  T
Q  623 taaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgtattttatat-------ggtttttatttggctaaataatatcatgcg 715  Q
     ||||||||||||||||| |  | | |||  ||||||||||||||||||||||| ||||||||       | |||||||||||||||||||||| |||||    
T  20725336 gaaagttagttaattaatta--agttttttatatttattgtaatatgcacttgttttttatattttagatgctttttatttggctaaataatatgatgcg 20725239  T
Q  716 tactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata--nnnnnnnatttcttatctttttgttgtaaaagtgcgggta 813  Q
    || ||||||||||||||||||| || |||||| |||||||||||||||||||||||||         |||| ||||||||||||||  ||||||||||||    
T  20725238 taatattttatatgttgatttagaagatttcatatcatattttaattatgttgtgatattttttgttatttattatctttttgttgggaaagtgcgggta 20725139  T
Q  814 atggg 818  Q
    |||||    
T  20725138 atggg 20725134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 586 - 676
Target Start/End: Complemental strand, 17539157 - 17539067
Alignment:
Q  586 acattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgt 676  Q
    ||||| |||| |||||| | |||||||||| | |||  ||| ||||||||||||||| || |||||  |||||||||||||||||||||||    
T  17539157 acattgtataaactataactataattttatgtaataccaaaattagttaattaatcataaatctttaatatttattgtaatatgcacttgt 17539067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 32618918 - 32618971
Alignment:
Q  719 tattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgat 772  Q
    ||||||||| |||||||||||| |||| | ||||||||||||||| ||||||||    
T  32618918 tattttataagttgatttaaaagattttaaatcatattttaattacgttgtgat 32618971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 773
Target Start/End: Complemental strand, 14522986 - 14522932
Alignment:
Q  719 tattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata 773  Q
    ||||||||| |||||||||||| |||| || | |||||||||||| |||||||||    
T  14522986 tattttataagttgatttaaaagattttaggttatattttaattaagttgtgata 14522932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 472 - 818
Target Start/End: Original strand, 19444402 - 19444749
Alignment:
Q  472 cgggtaaatacccgcattgtggg-tatgggcctggactcgggtgattacctgcaaatttgaatgggtatgggcacgggtacggacactcaagtacctacc 570  Q
    |||||||||||||||||||| || ||||||| ||| | ||| | ||||||  |||||||||||||||||| |  ||||      ||||| || ||| |||    
T  19444402 cgggtaaatacccgcattgttggatatgggcatgggcacggataattacccacaaatttgaatgggtatgagtgcggg------cactctagcacccacc 19444495  T
Q  571 ccgccgcatgcccgaacattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgc 670  Q
    ||||| | |||||| |||||||||| |||||| |||||||||||||| |||||||| ||||||| ||||||  || | |||| |||||||||||||||||    
T  19444496 ccgccccctgcccgcacattatatatactataccaataattttattt-atattaaatttagtta-ttaatccaaagtatttgatatttattgtaatatgc 19444593  T
Q  671 acttgtattttatatggt------ttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattat 764  Q
    |||| | ||||||||  |      ||||||||||||||||||||| ||| ||| ||||| ||||||||||||| ||||||||| ||| ||||||||| ||    
T  19444594 acttattttttatattttaaatgcttttatttggctaaataatatgatgtgtaatatttgatatgttgatttagaatatttcatatcgtattttaatcat 19444693  T
Q  765 gttgtgata--nnnnnnnatttcttatctttttgttgtaaaagtgcgggtaatggg 818  Q
    |||||||||         |||| ||||||||||||||| ||||||||| |||||||    
T  19444694 gttgtgatattttttattatttattatctttttgttgtgaaagtgcggataatggg 19444749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 572 - 685
Target Start/End: Original strand, 44494470 - 44494587
Alignment:
Q  572 cgccgcatgcccgaacattatatagactatatcaataattttatttgatattaa----agttagttaattaatcacaattctttgttatttattgtaata 667  Q
    |||| |||||||| |||||||||||| |||| ||||||| |||||| |||||||    ||||||||||||||||  ||||||||| ||||||||||||||    
T  44494470 cgccccatgcccgcacattatatagaatataccaataatattatttaatattaaagttagttagttaattaatcttaattctttgatatttattgtaata 44494569  T
Q  668 tgcacttgtattttatat 685  Q
    |||| |||| ||||||||    
T  44494570 tgcatttgttttttatat 44494587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 588 - 709
Target Start/End: Original strand, 27673903 - 27674033
Alignment:
Q  588 attatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttg---------tat 678  Q
    ||||||||||||||| ||||||||| || | ||||||||||||||||||||||   || |||||| |||||||| |||||||||||||         |||    
T  27673903 attatatagactataccaataatttgatgtaatattaaagttagttaattaatattaaatctttgatatttattataatatgcacttgttttttttatat 27674002  T
Q  679 tttatatggtttttatttggctaaataatat 709  Q
    |||| ||| ||||||||||||||||||||||    
T  27674003 tttaaatgctttttatttggctaaataatat 27674033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 817
Target Start/End: Original strand, 23997910 - 23998040
Alignment:
Q  688 tttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata-nnnnnnnatttct 786  Q
    |||||||||| ||||||| ||| ||  | | ||||||||| |||||||||| | |||| ||||||||||||||||| |||||||||        |||| |    
T  23997910 tttttatttgactaaatactatgatatgcaatattttataagttgatttaagagattttagatcatattttaattaagttgtgatatttttgttatttat 23998009  T
Q  787 tatctttttgttgtaaaagtgcgggtaatgg 817  Q
    |||||||||||||| |||||| |||||||||    
T  23998010 tatctttttgttgttaaagtgtgggtaatgg 23998040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 685
Target Start/End: Original strand, 1310029 - 1310095
Alignment:
Q  619 atattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgtattttatat 685  Q
    |||||||| ||||||||||||||  || || ||| |||||||||||||||||| |||| ||||||||    
T  1310029 atattaaaattagttaattaatcttaagtccttgatatttattgtaatatgcatttgttttttatat 1310095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 685
Target Start/End: Complemental strand, 32998068 - 32997989
Alignment:
Q  606 ataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgtattttatat 685  Q
    |||||||||| | ||| |||| |||||||  |||||   | |||||| ||||||||||||||||||||||| ||||||||    
T  32998068 ataattttatgtaatactaaaattagttagctaatccttaatctttgatatttattgtaatatgcacttgttttttatat 32997989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 491 - 676
Target Start/End: Complemental strand, 28971240 - 28971056
Alignment:
Q  491 tgggtatgggcctggactcgggtgattacctgcaaatttgaatgggtatgggcacgggtacggacactcaagtacctaccccgccgcatgcccgaacatt 590  Q
    ||||||||||||| | |  |||| ||| || ||||||||||| ||||| ||| |||||||| | ||||| |||||| |||| ||| |||||||| |||||    
T  28971240 tgggtatgggcctaggcatgggtaattgcccgcaaatttgaaagggtacgggtacgggtactggcactctagtacccaccctgccccatgcccgcacatt 28971141  T
Q  591 atatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgt 676  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||||  || |||||  |||||||||||||||||||||||    
T  28971140 atatagactataccaataattttattt-atattaaatttagttaattaatccgaagtctttcatatttattgtaatatgcacttgt 28971056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 676 - 773
Target Start/End: Complemental strand, 28971030 - 28970933
Alignment:
Q  676 tattttatatggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata 773  Q
    ||||||| ||| |||||||||||||||||||||| |||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  28971030 tattttagatgctttttatttggctaaataatatgatgcataatattttatatgttgatttaacatatttcatatcatattttaattatgttgtgata 28970933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 740
Target Start/End: Original strand, 42987671 - 42987735
Alignment:
Q  676 tattttatatggtttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaa 740  Q
    ||||||| ||| ||||||||| |||||||| ||| || |||||||||||||  ||||||||||||    
T  42987671 tattttagatgttttttatttagctaaatattatgatccgtactattttattagttgatttaaaa 42987735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 534 - 737
Target Start/End: Original strand, 37699523 - 37699731
Alignment:
Q  534 gggtatgggcacgggtacggacactcaagtacctaccccgccgcatgcccgaacattatatagactatatcaataattttatttgatattaaagttagtt 633  Q
    |||||||||  ||||||||| ||||| | | || |||||||| ||| |||| ||| ||||||||||||| ||||||||||||| ||||||||| ||||||    
T  37699523 gggtatgggtgcgggtacgggcactctattgcccaccccgcc-catccccgcacactatatagactataccaataattttatt-gatattaaatttagtt 37699620  T
Q  634 aattaatcacaattctttgttatttattgtaatatgcacttg-------tattttatatggtttttatttggctaaataatatcatgcgtactattttat 726  Q
    |||||| |  || |||| | ||||||||||||||||||||||       ||||||| ||| |||||||||| ||||||||||| |||| || ||||||||    
T  37699621 aattaaacctaagtcttagatatttattgtaatatgcacttgttttttatattttagatgttttttatttgactaaataatattatgcctaatattttat 37699720  T
Q  727 atgttgattta 737  Q
     ||||||||||    
T  37699721 ttgttgattta 37699731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 555 - 681
Target Start/End: Complemental strand, 5415283 - 5415157
Alignment:
Q  555 cactcaagtacctaccccgccgcatgcccgaacattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgtt 654  Q
    ||||| |||| | |||||| | |||||||| |||||||| | |||||| |||||||||||| | ||||||||||| |||||||||||  || |||||| |    
T  5415283 cactctagtatccaccccgtctcatgcccgcacattataaacactataccaataattttatgtaatattaaagtttgttaattaatctaaagtctttgat 5415184  T
Q  655 atttattgtaatatgcacttgtatttt 681  Q
    ||||||||||||||  |||||| ||||    
T  5415183 atttattgtaatatatacttgtttttt 5415157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 688 - 758
Target Start/End: Complemental strand, 6311159 - 6311089
Alignment:
Q  688 tttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatatttt 758  Q
    |||||||||||||||||| ||  || |||||||||||||  |||||||||||| |  | ||||||||||||    
T  6311159 tttttatttggctaaatactacaattcgtactattttatgagttgatttaaaaaaaattagatcatatttt 6311089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 688 - 754
Target Start/End: Complemental strand, 38309953 - 38309887
Alignment:
Q  688 tttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcata 754  Q
    |||||||||||||||||| ||  || |||||||||||||  |||||||||||  ||||| |||||||    
T  38309953 tttttatttggctaaatattacgattcgtactattttattagttgatttaaataatttcggatcata 38309887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 713 - 766
Target Start/End: Complemental strand, 20825591 - 20825538
Alignment:
Q  713 gcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgt 766  Q
    ||||||||||||||| |||||||||||| |||| |||| |||||||||||||||    
T  20825591 gcgtactattttataagttgatttaaaagattttagattatattttaattatgt 20825538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 593 - 674
Target Start/End: Complemental strand, 39961707 - 39961626
Alignment:
Q  593 atagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcactt 674  Q
    |||||||||| | || ||||||| ||||| |||| ||||||||||||||  || |||||| ||||||||||| |||||||||    
T  39961707 atagactatacctatgattttatatgatactaaaattagttaattaatcctaagtctttgatatttattgtagtatgcactt 39961626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 772
Target Start/End: Complemental strand, 39961572 - 39961488
Alignment:
Q  688 tttttatttggctaaataatatcatgcgtactattttatatgttgatttaaaatatttcagatcatattttaattatgttgtgat 772  Q
    |||||||||||||||||| ||| ||| ||| |||||| || |||| ||| ||| |||| |||||||||||| |||| ||||||||    
T  39961572 tttttatttggctaaatactatgatgtgtaatattttttaagttggtttgaaagattttagatcatattttgattacgttgtgat 39961488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 685
Target Start/End: Original strand, 49016818 - 49016926
Alignment:
Q  577 catgcccgaacattatatagactatatcaataattttatttgatattaaagttagttaattaatcacaattctttgttatttattgtaatatgcacttgt 676  Q
    ||||| || |||||||| | ||||||   |||||||||| | ||| |||| ||||||||||||||   | | |||| |||||||||||||||||||||||    
T  49016818 catgctcgcacattataaacactataattataattttatgtaatactaaaattagttaattaatccttagtatttgatatttattgtaatatgcacttgt 49016917  T
Q  677 attttatat 685  Q
     ||||||||    
T  49016918 tttttatat 49016926  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 545
Target Start/End: Original strand, 9826380 - 9826507
Alignment:
Q  420 atggcaattgaaaccaagtctaatgggcacccgc-aaaaatacctaccatagacgggtaaatacccgca-ttgtgggtatgggcctggactcgggtgatt 517  Q
    ||||||||| || ||||||| |  |||||||||| |||||||||  | || |||||||||||||||||| || ||||||||||   || ||||||| |||    
T  9826380 atggcaattcaacccaagtccatcgggcacccgcaaaaaatacccgcaatggacgggtaaatacccgcacttatgggtatggggacgggctcgggtaatt 9826479  T
Q  518 acctgcaaatttgaatgggtatgggcac 545  Q
    ||| ||||| || || ||| ||||||||    
T  9826480 acccgcaaactttaacgggcatgggcac 9826507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 773
Target Start/End: Complemental strand, 34619285 - 34619234
Alignment:
Q  722 tttatatgttgatttaaaatatttcagatcatattttaattatgttgtgata 773  Q
    |||||||||||||||||||||||| ||||  |||||||||||  ||||||||    
T  34619285 tttatatgttgatttaaaatattttagattgtattttaattaccttgtgata 34619234  T

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Target: scaffold0229 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 681
Target Start/End: Original strand, 15777 - 15830
Alignment:
Q  628 ttagttaattaatcacaattctttgttatttattgtaatatgcacttgtatttt 681  Q
    ||||||||||||||  || |||||| ||||||||||||||||||||||| ||||    
T  15777 ttagttaattaatccgaagtctttgatatttattgtaatatgcacttgtttttt 15830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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