View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5977-Insertion-6 (Length: 780)

Name: NF5977-Insertion-6
Description: NF5977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5977-Insertion-6
NF5977-Insertion-6
[»] chr7 (9 HSPs)
chr7 (431-593)||(17908438-17908600)
chr7 (8-196)||(17908814-17909002)
chr7 (622-721)||(17908329-17908423)
chr7 (736-780)||(17907693-17907737)
chr7 (9-59)||(22588848-22588898)
chr7 (9-58)||(48395376-48395425)
chr7 (9-57)||(16829573-16829621)
chr7 (9-57)||(16954030-16954078)
chr7 (9-59)||(45256618-45256668)
[»] chr3 (2 HSPs)
chr3 (274-330)||(34950442-34950498)
chr3 (15-59)||(37073798-37073842)
[»] chr2 (3 HSPs)
chr2 (274-322)||(32550570-32550618)
chr2 (15-59)||(40874148-40874192)
chr2 (9-51)||(15123827-15123869)
[»] chr4 (3 HSPs)
chr4 (274-334)||(28494630-28494690)
chr4 (15-59)||(54221944-54221988)
chr4 (15-54)||(961416-961455)
[»] chr1 (2 HSPs)
chr1 (9-61)||(3904316-3904368)
chr1 (20-69)||(49647184-49647233)
[»] chr5 (4 HSPs)
chr5 (15-58)||(844173-844216)
chr5 (274-322)||(7548239-7548287)
chr5 (9-57)||(43057569-43057617)
chr5 (9-51)||(6968607-6968649)
[»] chr8 (1 HSPs)
chr8 (8-54)||(30170624-30170670)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 7e-82; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 431 - 593
Target Start/End: Complemental strand, 17908600 - 17908438
Alignment:
Q  431 cctctcaattagtcgacggaactcacatacaacacaccgcagaagatcgtgtctcctcttcgttactcaaatttcttcattttctaatttcgctccaaat 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17908600 cctctcaattagtcgacggaactcacatacaacacaccgcagaagatcatgtctcctcttcgttactcaaatttcttcattttctaatttcgctccaaat 17908501  T
Q  531 tctcttcaaaacgcgcttcttcactcataagctcttcctcctttcacagtaagttactctgct 593  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17908500 tctcttcaaaacgcgcttcttcactcaaaagctcttcctcctttcacagtaagttactctgct 17908438  T

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Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 17909002 - 17908814
Alignment:
Q  8 atggttctcaccaaaattgtcaaatattagttgtacaaatatcactcctctaaactttaacaggggaaatgaatggagggacaacttggtcgacaatttt 107  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||||||||    
T  17909002 atggttctcactaaaattgtcaaatattagttgtataaatatcactcctctaaactttaacaggggaaatgaatggagggagaacttgcctcacaatttt 17908903  T
Q  108 taatttaaggagacatttgccnnnnnnnncaaatttgtggaggtagttgtaagattttacaatttcgagagatttgggttatgttaacc 196  Q
    |||| ||||||||||||||||        ||||||| |  |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17908902 taatgtaaggagacatttgccttttttttcaaatttctcaaggtagttgtaagattttacaatttcaagagatttgggttatgttaacc 17908814  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 622 - 721
Target Start/End: Complemental strand, 17908423 - 17908329
Alignment:
Q  622 aaccaaatctcaatgtagatacatacatacacgagttttgcttaattttgcatactttatggactaaattgttggattttaatgactattattgtattta 721  Q
    ||||||||||||||||| |||||||||    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  17908423 aaccaaatctcaatgtaaatacataca----cgagttttgcttaattttgcatactttaaggactaaattgttgga-tttaatgactattattgtattta 17908329  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 736 - 780
Target Start/End: Complemental strand, 17907737 - 17907693
Alignment:
Q  736 ttggttgttgttgttgatcttgcacattaggtcaaacttttaacc 780  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  17907737 ttggttgttgttgttgatcttgcacatcaggtcaaacttttaacc 17907693  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 22588898 - 22588848
Alignment:
Q  9 tggttctcaccaaaattgtcaaatattagttgtacaaatatcactcctcta 59  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  22588898 tggttgtcaccaaagttgtctaatattagttgtacaaatatcactcctcta 22588848  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 48395376 - 48395425
Alignment:
Q  9 tggttctcaccaaaattgtcaaatattagttgtacaaatatcactcctct 58  Q
    ||||| ||||||| |||||| |||||||||||||||||||||| ||||||    
T  48395376 tggttgtcaccaagattgtctaatattagttgtacaaatatcaatcctct 48395425  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 16829621 - 16829573
Alignment:
Q  9 tggttctcaccaaaattgtcaaatattagttgtacaaatatcactcctc 57  Q
    ||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  16829621 tggttgtcaccaaagttgtttaatattagttgtacaaatatcactcctc 16829573  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 16954030 - 16954078
Alignment:
Q  9 tggttctcaccaaaattgtcaaatattagttgtacaaatatcactcctc 57  Q
    ||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  16954030 tggttgtcaccaaagttgtttaatattagttgtacaaatatcactcctc 16954078  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 45256668 - 45256618
Alignment:
Q  9 tggttctcaccaaaattgtcaaatattagttgtacaaatatcactcctcta 59  Q
    ||||| |||||||| ||||| |||||||| ||||||||||||| |||||||    
T  45256668 tggttgtcaccaaagttgtctaatattagatgtacaaatatcaatcctcta 45256618  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 34950442 - 34950498
Alignment:
Q  274 ttgattgcacaagtttcaatatgatgttactatatttgctatcttaacccgtgcccc 330  Q
    |||| ||||||||||||||| |||||||||||||||||||  |||||||||||||||    
T  34950442 ttgactgcacaagtttcaatgtgatgttactatatttgcttccttaacccgtgcccc 34950498  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 37073798 - 37073842
Alignment:
Q  15 tcaccaaaattgtcaaatattagttgtacaaatatcactcctcta 59  Q
    ||||||||||| || |||||||||||||||||||||| |||||||    
T  37073798 tcaccaaaattatctaatattagttgtacaaatatcattcctcta 37073842  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 32550618 - 32550570
Alignment:
Q  274 ttgattgcacaagtttcaatatgatgttactatatttgctatcttaacc 322  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  32550618 ttgactgcacaagtttcaatatgatgttactatatttgctaccttaacc 32550570  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 40874192 - 40874148
Alignment:
Q  15 tcaccaaaattgtcaaatattagttgtacaaatatcactcctcta 59  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  40874192 tcaccaaagttgtctaatattagttgtacaaatatcactcctcta 40874148  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 15123869 - 15123827
Alignment:
Q  9 tggttctcaccaaaattgtcaaatattagttgtacaaatatca 51  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  15123869 tggttgtcaccaaaattatcaaatattagttgtacaaatatca 15123827  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 28494690 - 28494630
Alignment:
Q  274 ttgattgcacaagtttcaatatgatgttactatatttgctatcttaacccgtgccccgggg 334  Q
    ||||||||||||||| |||  |||||||||||||||||||  ||||||| |||||||||||    
T  28494690 ttgattgcacaagttccaacgtgatgttactatatttgcttccttaaccagtgccccgggg 28494630  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 54221988 - 54221944
Alignment:
Q  15 tcaccaaaattgtcaaatattagttgtacaaatatcactcctcta 59  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  54221988 tcaccaaagttgtctaatattagttgtacaaatatcactcctcta 54221944  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 961416 - 961455
Alignment:
Q  15 tcaccaaaattgtcaaatattagttgtacaaatatcactc 54  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  961416 tcaccaaaattgtttaatattagttgtacaaatatcactc 961455  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 3904316 - 3904368
Alignment:
Q  9 tggttctcaccaaaattgtcaaatattagttgtacaaatatcactcctctaaa 61  Q
    ||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  3904316 tggttgtcatcaaaattgtctaattttagttgtacaaatatcactcctctaaa 3904368  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 49647184 - 49647233
Alignment:
Q  20 aaaattgtcaaatattagttgtacaaatatcactcctctaaactttaaca 69  Q
    |||||||||||| | ||||||| ||||||||| | |||||||||||||||    
T  49647184 aaaattgtcaaaaaatagttgttcaaatatcatttctctaaactttaaca 49647233  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 844173 - 844216
Alignment:
Q  15 tcaccaaaattgtcaaatattagttgtacaaatatcactcctct 58  Q
    |||||||| ||||| |||||||||||||||||||||||||||||    
T  844173 tcaccaaagttgtctaatattagttgtacaaatatcactcctct 844216  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 7548287 - 7548239
Alignment:
Q  274 ttgattgcacaagtttcaatatgatgttactatatttgctatcttaacc 322  Q
    |||| ||||||||||||||| ||||||||||||||||| | ||||||||    
T  7548287 ttgactgcacaagtttcaatgtgatgttactatatttgttttcttaacc 7548239  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 43057569 - 43057617
Alignment:
Q  9 tggttctcaccaaaattgtcaaatattagttgtacaaatatcactcctc 57  Q
    ||||| |||||||  ||||| ||||||||||||||||||||||||||||    
T  43057569 tggttgtcaccaaggttgtctaatattagttgtacaaatatcactcctc 43057617  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 6968649 - 6968607
Alignment:
Q  9 tggttctcaccaaaattgtcaaatattagttgtacaaatatca 51  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||    
T  6968649 tggttgtcaccaaagttgtctaatattagttgtacaaatatca 6968607  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 30170670 - 30170624
Alignment:
Q  8 atggttctcaccaaaattgtcaaatattagttgtacaaatatcactc 54  Q
    |||||| |||||||||||||| || ||||||||||||||||||||||    
T  30170670 atggttgtcaccaaaattgtctaaaattagttgtacaaatatcactc 30170624  T

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