View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5977-Insertion-9 (Length: 311)
Name: NF5977-Insertion-9
Description: NF5977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5977-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 88 - 311
Target Start/End: Original strand, 32604551 - 32604773
Alignment:
| Q |
88 |
cttggaagctttcatgtgatttgggatggagccttagatttctattcatagtgttgaaaacaataagagtaaaaaacaagatggctcagattgcacatac |
187 |
Q |
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| T |
32604551 |
cttggaagctttcatgtgatttgggatggagccttagatttctattcatagtgttgaaaacaataagagtaaaaaacaagatggctcaggttgcacatac |
32604650 |
T |
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| Q |
188 |
gatagaaaatggaaggtcgaacgtacaatgatgttagcaaaatgtgtgacgagatttgacatgggttgaaaccaacattttcnnnnnnngtaaattccca |
287 |
Q |
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| T |
32604651 |
catagaaaatggaaggtcgaacgcacaatgatgttagcaaaatgtgcgacgagatttgacatgggttgaaaccaaca-tttcaaaaaaagtaaattccca |
32604749 |
T |
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| Q |
288 |
agacaaattaaacgacggcacgcg |
311 |
Q |
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| T |
32604750 |
agacaaattaaacgacggcacgcg |
32604773 |
T |
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