View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5977_high_7 (Length: 237)

Name: NF5977_high_7
Description: NF5977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5977_high_7
NF5977_high_7
[»] chr5 (11 HSPs)
chr5 (1-223)||(39471922-39472144)
chr5 (1-170)||(39464595-39464764)
chr5 (23-187)||(39450921-39451086)
chr5 (12-162)||(39475453-39475603)
chr5 (21-167)||(39470838-39470984)
chr5 (5-156)||(39454592-39454743)
chr5 (1-162)||(39458355-39458516)
chr5 (14-162)||(39486406-39486554)
chr5 (41-162)||(39480320-39480441)
chr5 (44-170)||(39460189-39460315)
chr5 (53-157)||(43312626-43312730)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39472144 - 39471922
Alignment:
Q  1 gtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39472144 gtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagca 39472045  T
Q  101 gaaactatatgaccctcagccggaaaagagacaaacaccacttctgctttcttcatcttggagcacaggaaaatggatatacacttagtatgagtgactc 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39472044 gaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttcttcatcttggagcacaggaaaatggttatacacttagtatgagtgactc 39471945  T
Q  201 tctttttctttgtgttagaagtg 223  Q
    |||||||||||||||||||||||    
T  39471944 tctttttctttgtgttagaagtg 39471922  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 39464595 - 39464764
Alignment:
Q  1 gtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagca 100  Q
    ||||||||||| ||||| | | ||||||| |||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  39464595 gtagacatcggattctgcggtttgtgggagtttgatgactaagatggttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggca 39464694  T
Q  101 gaaactatatgaccctcagccggaaaagagacaaacaccacttctgctttcttcatcttggagcacagga 170  Q
    ||||||| ||||||  |||| ||||||| || |||||| ||||||||||||||||| ||| |||||||||    
T  39464695 gaaactagatgacctacagcgggaaaagggataaacactacttctgctttcttcattttgaagcacagga 39464764  T

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Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 39451086 - 39450921
Alignment:
Q  23 tgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccg 122  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| || || || |  ||||||| ||| | | || | |    
T  39451086 tgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccag 39450987  T
Q  123 gaaaagagacaaacaccacttctgctttcttcatcttggagcacaggaaaat-ggatatacactta 187  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  39450986 gaaaagggataaacaccacttctgctttcttcatcttgaagcacaggataataggatatacactta 39450921  T

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Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 39475603 - 39475453
Alignment:
Q  12 tttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatg 111  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| || |  |||| || |||    
T  39475603 tttctgttatgtgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatg 39475504  T
Q  112 accctcagccggaaaagagacaaacaccacttctgctttcttcatcttgga 162  Q
     | |  | | ||||||| || ||||||||||||||||||||||||||||||    
T  39475503 gctcagaccgggaaaagggataaacaccacttctgctttcttcatcttgga 39475453  T

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Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 39470838 - 39470984
Alignment:
Q  21 tgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagc 120  Q
    ||||||||||||| || ||||| |||||||||| ||| ||||||||| |||||||||||||||| || ||||| |  |||||||||| ||||||  ||||    
T  39470838 tgtgtgggaatttcatgactaagacagttattcagaggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctacagc 39470937  T
Q  121 cggaaaagagacaaacaccacttctgctttcttcatcttggagcaca 167  Q
     ||||||| || ||||||||||||  |||||||||| ||||||||||    
T  39470938 gggaaaagggataaacaccacttccactttcttcatgttggagcaca 39470984  T

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Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 39454743 - 39454592
Alignment:
Q  5 acatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaa 104  Q
    ||||| ||||| |||  |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |  ||||    
T  39454743 acatcagtttcagtggcgtgtggaaatttgaggactaaaacagttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaa 39454644  T
Q  105 ctatatgaccctcagccggaaaagagacaaacaccacttctgctttcttcat 156  Q
    ||| ||| ||  || | ||| ||| || ||||||||||||||||||||||||    
T  39454643 ctaaatggccaacaccaggagaagggataaacaccacttctgctttcttcat 39454592  T

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Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 39458355 - 39458516
Alignment:
Q  1 gtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagca 100  Q
    |||||||||  |||||||  ||||||| ||||| || || || | ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |      
T  39458355 gtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttattcggagacggttatcacggttgattagaagctttgcaaattcgagggtg 39458454  T
Q  101 gaaactatatgaccctcagccggaaaagagacaaacaccacttctgctttcttcatcttgga 162  Q
    ||||||| ||||||  || | ||  |||||| || |||||||||||||||||||||| ||||    
T  39458455 gaaactagatgaccaacaccaggtgaagagataatcaccacttctgctttcttcatcctgga 39458516  T

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Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 39486554 - 39486406
Alignment:
Q  14 tctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgac 113  Q
    |||||| |||||||||||||||| || || |  |||||||||||||||||||||||||||||||||||||| ||||| || || |  ||||||| |||||    
T  39486554 tctgtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgac 39486455  T
Q  114 cctcagccggaaaagagacaaacaccacttctgctttcttcatcttgga 162  Q
    |  || | ||  ||| || || |||||||||||||||||||||||||||    
T  39486454 caacaccaggtgaagggataatcaccacttctgctttcttcatcttgga 39486406  T

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Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 39480441 - 39480320
Alignment:
Q  41 aaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagagacaaacacca 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || || |  ||||||| ||||||  || | ||  ||| || || |||||    
T  39480441 aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcacca 39480342  T
Q  141 cttctgctttcttcatcttgga 162  Q
    ||||||||||||||||| ||||    
T  39480341 cttctgctttcttcatcctgga 39480320  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 39460315 - 39460189
Alignment:
Q  44 acagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagagacaaacaccactt 143  Q
    ||||| |||||||| || |||||||||||| |||||||||| || ||||| || |  ||| ||| ||| | |  | | ||||||| || |||||| ||||    
T  39460315 acagtaattcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgggaaaagggataaacacaactt 39460216  T
Q  144 ctgctttcttcatcttggagcacagga 170  Q
    |||||||||||||||||||||||||||    
T  39460215 ctgctttcttcatcttggagcacagga 39460189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 43312626 - 43312730
Alignment:
Q  53 cggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagagacaaacaccacttctgctttct 152  Q
    ||||||||||||||||||||||| |||||||| |||||||| || |  || |||| ||| ||| || | ||| ||| || |||||||||||||  |||||    
T  43312626 cggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataaacaccacttctagtttct 43312725  T
Q  153 tcatc 157  Q
    |||||    
T  43312726 tcatc 43312730  T

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