View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5977_low_1 (Length: 391)
Name: NF5977_low_1
Description: NF5977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5977_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 21384729 - 21384382
Alignment:
| Q |
17 |
cacttccggttgcttttgttcattttccacagtggggtagcatgttccttccaccttcaaaagagatcaatgaagaacactattacacttctgaatggaa |
116 |
Q |
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| T |
21384729 |
cacttccagttgcttttgttcattttccacagtggggtagcatgttccttccagcttcaaaagagatcaatgaagaacactattacacttctgaatggaa |
21384630 |
T |
|
| Q |
117 |
tgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagagaggtaagcgtgtggcttctgcagcaacacca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21384629 |
tgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagagaggaaagcgtgtggcttctgcagcaacacca |
21384530 |
T |
|
| Q |
217 |
ccaaatacaactcctacccactaggagtacaagttatatgcctctcttta-tttgtttaaagtttaagggctaatgaatttcccatgctttaataagtta |
315 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21384529 |
ccaaatacaactcctacccactagtagtacaagt--tatgccccactttattttgtttaaagtttaagggctaatgaatttcccatgctttaataagtta |
21384432 |
T |
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| Q |
316 |
atattggtgtaaagtcttacaccgttgaaactcctagataggatttggtg |
365 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21384431 |
atattggtgtaaagttttacaccgttgaaactcctagataggatttggtg |
21384382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 21372828 - 21373108
Alignment:
| Q |
17 |
cacttccggttgcttttgttcattttccacagtggggtagcatgttccttccaccttcaaaagagatcaatgaagaacactattacacttctgaatggaa |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372828 |
cacttccagttgcttttgttcattttccacagtggggtagcatgttccttccagcttcaaaagagatcaatgaagaacactattacacttctgaatggaa |
21372927 |
T |
|
| Q |
117 |
tgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagagaggtaagcgtgtggcttctgcagcaacacca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21372928 |
tgaagatgaagtacagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagagaggaaagcgtgtggcttctgcagcaacacca |
21373027 |
T |
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| Q |
217 |
ccaaatacaactcctacccactaggagtacaagttatatgcctctctttatttgtttaaagtttaagggctaatgaatttc |
297 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
21373028 |
ccaaatacaactcctacccactagtagtacaagttatatgccccactttatttgtttaaagtttaagggctaatgaatttc |
21373108 |
T |
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