View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5977_low_2 (Length: 363)
Name: NF5977_low_2
Description: NF5977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5977_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 16919686 - 16920023
Alignment:
| Q |
9 |
agcatagggacaatcaaagaaaaggtgaaaaatcgtttcctccgaaaccatgcaaagactgcaaactgaaggcaaatggcatcctctatcttttaggttc |
108 |
Q |
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| T |
16919686 |
agcataaggacaatcaaagaataggtgaaaagccgtttcctcagaaaccatgcaaagactgcaaactgaaggcaaatgacatcctctatcttttaggttc |
16919785 |
T |
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| Q |
109 |
tcatcaactgggattttatcgttcattaatctccatgcaagcagagattttgatagggggaatgtttggagaccaaatagttttggcccattgaatagac |
208 |
Q |
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| T |
16919786 |
tcatcaactgggattttatcgttcattaatctccatgcaagcagagattttgat-gggggaatgtttggagaccagatagttttggcccattgaatagac |
16919884 |
T |
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| Q |
209 |
tgggaaggggtgtctttaaacttataagcatccttaaaagataaactaccatttgttgtatgtgtccaaaccagatcatcttctatctcctgcataggga |
308 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16919885 |
tgggaaggggtgtctttaaactcataagcatccttaaaagataagcttccatttgttgtatgtgtccaaaccagatcatcttctatctcctgcataggga |
16919984 |
T |
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| Q |
309 |
tggaaactttatgaacaaggttccaaacatttggaaagt |
347 |
Q |
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||| |||||| |||||||| ||||| |||| |||||||| |
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| T |
16919985 |
tggtaactttgtgaacaagattccatacatctggaaagt |
16920023 |
T |
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