View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5977_low_4 (Length: 308)
Name: NF5977_low_4
Description: NF5977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5977_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 40471282 - 40471579
Alignment:
| Q |
1 |
tgaaccattccatcagaaatcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40471282 |
tgaaccattccatcagaaatcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctg |
40471381 |
T |
|
| Q |
101 |
caatctcaccatctaatgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40471382 |
caatctcaccatctaatgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttg |
40471481 |
T |
|
| Q |
201 |
cttctgtccatattttctccagttatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40471482 |
cttctgtccatattttctccagttatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
40471579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 26332543 - 26332607
Alignment:
| Q |
157 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctcca |
221 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26332543 |
gtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctcca |
26332607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 16863876 - 16863593
Alignment:
| Q |
1 |
tgaaccattccatcagaaatcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16863876 |
tgaaccattccatcagaagtcattcctgatgttgctcccgagtttcgcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctg |
16863777 |
T |
|
| Q |
101 |
caatctcaccatctaatgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16863776 |
caatctcaccatctaatgatctttcaactttctttttaactggataattaggatatgtgcacttgtaataacttcgaagatactcg-------------- |
16863691 |
T |
|
| Q |
201 |
cttctgtccatattttctccagttatatccatcatacgaaggtctatcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
298 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16863690 |
cttctttccatattttctctagttatatccatcatacgaaggtctatcaacattatttgtggatggtaatgctttttggtcctcctcaatgctctgtg |
16863593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 2056406 - 2056300
Alignment:
| Q |
127 |
actttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttat |
226 |
Q |
| |
|
||||||||||||||||||||||| | || || |||||||| ||||||||||| |||||||| || || |||||||| || |||||||||||||| |||| |
|
|
| T |
2056406 |
actttctttttaactggacaatttgaatgagtacacttgtagtaacttcgagggtactcgctacccttaacttgcttttggccatattttctccaattat |
2056307 |
T |
|
| Q |
227 |
atccatc |
233 |
Q |
| |
|
||||||| |
|
|
| T |
2056306 |
atccatc |
2056300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 26967036 - 26967130
Alignment:
| Q |
141 |
tggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
235 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||| |||| || |||||||| ||||| || ||||||||||||||||| || |||||||||| |
|
|
| T |
26967036 |
tggacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcat |
26967130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 18876301 - 18876394
Alignment:
| Q |
142 |
ggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcat |
235 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| || || |||||||| ||||| |||||||| || ||||||| |
|
|
| T |
18876301 |
ggacagttaggatgcgtgcacttgtaataacttcgaggaaactcgctacctttcacctgtttctgtccgtatttcctccagttgtagccatcat |
18876394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 31615312 - 31615430
Alignment:
| Q |
117 |
tgatctttcaactttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatatttt |
216 |
Q |
| |
|
|||||| ||||||||||| || ||||| ||||| |||||||| ||||| ||||||| |||| || ||||| || |||||||| |||||||||||| |
|
|
| T |
31615312 |
tgatctctcaactttcttctttgtaggacagttagggtatgtgcatttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatatttt |
31615411 |
T |
|
| Q |
217 |
ctccagttatatccatcat |
235 |
Q |
| |
|
| ||| || |||||||||| |
|
|
| T |
31615412 |
cgccaattgtatccatcat |
31615430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 3669270 - 3669194
Alignment:
| Q |
157 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatc |
233 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||| ||||| |||| ||||||||||||||| || |||||||| |
|
|
| T |
3669270 |
gtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatc |
3669194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 32110260 - 32110321
Alignment:
| Q |
163 |
ttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagtt |
224 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||| || |||||||| || |||||||| |
|
|
| T |
32110260 |
ttgtaataacttcgaggaaactcgcaacctttcacttgtttttgtccatacttcctccagtt |
32110321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University