View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5977_low_5 (Length: 251)
Name: NF5977_low_5
Description: NF5977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5977_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 21384236 - 21384001
Alignment:
| Q |
4 |
ttttactaattaaaacaaattgaccaatttaatcaagtgaatggagtatatcaagtgattaattaa----atttcgaatagagtttctgaagtttgaact |
99 |
Q |
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| T |
21384236 |
ttttactacttaaaacaaattgaccaatttaatcaagtgaatg-agtatatcaagtgattgattaatcaaattttgaatagagtttctaaagtttgaact |
21384138 |
T |
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| Q |
100 |
ctgacaaaaataattattgattagacattatttacctcccgattataggtta-aaccagtttcattttaaaaaatcaaatgatttgactgcacatcttca |
198 |
Q |
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||||| ||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
21384137 |
ctgacggaaacaattattgattagacgttatttacctcctgattataggttataaccagtttcattctaaaaaatcaaatgatttgactgcatatcttca |
21384038 |
T |
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| Q |
199 |
tcgtaaacttttgaatataagggtcctctttaactcc |
235 |
Q |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
21384037 |
tcgtaaacttttggatataagggtcctctttaactcc |
21384001 |
T |
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