View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5978-Insertion-1 (Length: 930)
Name: NF5978-Insertion-1
Description: NF5978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5978-Insertion-1 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 730; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 9 - 930
Target Start/End: Original strand, 27227670 - 27228572
Alignment:
| Q |
9 |
gaactatattataatgagtatttggttttgttaagcttattttataacactttattagtgttgctcccaaatcagttagtgttagaagcttgttagtcat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27227670 |
gaactatattataatgagtatttggttttgttaagcttattttataacactttattagtgttgctcccaaatcagttagtgttagaagcttgttagtcat |
27227769 |
T |
|
| Q |
109 |
taggaagaagttcaatggggattgtggatttgggaagaggttccgagttaatctccccagaatgtgtgatgatttacgtgttatgtgcgatgatgatgnn |
208 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27227770 |
taggaagaaattcaatggggattgtggatttgggaagatgttccgagttaatctccccagaatgtgtgatgatttacatgttatgtgcgatgatgatgtt |
27227869 |
T |
|
| Q |
209 |
nnnnnnnnataaattccatgcagaatggatattatcccgacagaaaccatataatcctttgaatatatcttggcaatgtggtaaagttttgtattggtgg |
308 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27227870 |
ttttttttataaattcaatgcagaatggatattatcccgacagaaaccatataatcctttgaatatatcttggca-tgtggtaaagttttgtattggtgg |
27227968 |
T |
|
| Q |
309 |
aatttaagtgattcacttggcgaaagagattgtgatattgatgctttggatgataaaatgaagtctgctggccgatactggtttgggaagtttgcagctg |
408 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27227969 |
aatttaagtggttcacttggcgaaagagattgtgatattgatgctttggatgataaaatgaagtctgctggccgatactggtttgggaagtttgcagctg |
27228068 |
T |
|
| Q |
409 |
cttagagcacatgatgggttcgtagcataataactgaccaatctgtcgctctgattcattgtttgaggagctaacttctggatgtgatgcgagcattgaa |
508 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27228069 |
cttagagcacatcatgggttcgtagcataataactgaccaatctgtcgctctgattcattgtttgaggagctaacttctggatgtgatgcgagcattgaa |
27228168 |
T |
|
| Q |
509 |
gttctggatcaagcttttacaatggtacatccaggttatgcatcttcatttgttatttttaaaactcatgatgatactaatactcaaaagcatgttaaaa |
608 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
27228169 |
gttctggatcaa----------tggtacatccaggttatgcatcttcatttgttatttttcaaacccatgatgatactaatactcaaaagcattttaaaa |
27228258 |
T |
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| Q |
609 |
agtctgagactttatgctttcatagtatcagtgtgtggtattcttgctaagagatttgtttacaatggaatgaaatatcatcacttttttcttatccctt |
708 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27228259 |
agtctgagactttatgctttcatagtatcagtgtgtggtattcttgctaagagacttgtttacaatggaatgaaatatcatcactttttt-ttatccctt |
27228357 |
T |
|
| Q |
709 |
tattcactgttattaagctatatgattttgtaggtccaatcaatcacattatatgtctctctccattcatactgaagtagcttcccttaaacttttaccn |
808 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27228358 |
tattcactgttattaagctatatgattttgtaggtccaatcaatcacattatatgtctctctccattcatactga---agcttcccttaaacttttacct |
27228454 |
T |
|
| Q |
809 |
nnnnnnctttctttctccttctttaagacattccacattactttaaagaaattacttggaaggagggatgtaggaaaagtgatgagatgggttactttac |
908 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27228455 |
ttttttctttctttct-cttctttaagacatt-cacattactttaaagaaattacatggaagga-ggatgtaggaaaagtgatgagatgggttactttac |
27228551 |
T |
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| Q |
909 |
agaaataccaaaatgggaagga |
930 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
27228552 |
agaaata-caaaatgggaagga |
27228572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 819 - 892
Target Start/End: Original strand, 26634724 - 26634795
Alignment:
| Q |
819 |
ctttctccttctttaagacattccacattactttaaagaaattacttggaaggagggatgtaggaaaagtgatg |
892 |
Q |
| |
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|||||| ||||||||||||||| |||||| ||||| |||||| || ||| |||| | ||||||||||||||||| |
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| T |
26634724 |
ctttcttcttctttaagacatt-cacattgctttatagaaatgacatggtagga-gaatgtaggaaaagtgatg |
26634795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 819 - 892
Target Start/End: Original strand, 26740690 - 26740761
Alignment:
| Q |
819 |
ctttctccttctttaagacattccacattactttaaagaaattacttggaaggagggatgtaggaaaagtgatg |
892 |
Q |
| |
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|||||| ||||||||||||||| |||||| ||||| |||||| || ||| |||| | ||||||||||||||||| |
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| T |
26740690 |
ctttcttcttctttaagacatt-cacattgctttatagaaatgacatggtagga-gaatgtaggaaaagtgatg |
26740761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 5e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 5076548 - 5076720
Alignment:
| Q |
217 |
ataaattccatgcagaatggatattatcccgacagaaaccatataatcctttgaatatatcttggcaatgtggtaaagttttgtattggtggaatttaag |
316 |
Q |
| |
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||||||||||||||||||||||||| |||| || |||||||||||||| ||||| || ||| ||| | || ||||| |||||||||||||||| ||| |
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| T |
5076548 |
ataaattccatgcagaatggatattg-cccggcacaaaccatataatcccttgaacatgtctgggcgacatgttaaaggtttgtattggtggaatcaaag |
5076646 |
T |
|
| Q |
317 |
tgattcacttggcgaaagagattgtgatattgatgctttggatgataaaatgaagtctgctggccgatactggt |
390 |
Q |
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| T |
5076647 |
tggttcacttggggaaagagatggcgatattgatgctttggatgataaaatgaagtctgctgggcgatactggt |
5076720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 458 - 565
Target Start/End: Original strand, 5081155 - 5081262
Alignment:
| Q |
458 |
tctgattcattgtttgaggagctaacttctggatgtgatgcgagcattgaagttctggatcaagcttttacaatggtacatccaggttatgcatcttcat |
557 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| | ||||||||||||||| |||| |
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| T |
5081155 |
tctgcttcattgtttgaggagctaacttctggatgtgatgcgggcattgaagttttggatcaagcttttactatggtgcttccaggttatgcatcgtcat |
5081254 |
T |
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| Q |
558 |
ttgttatt |
565 |
Q |
| |
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|||||||| |
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| T |
5081255 |
ttgttatt |
5081262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 5076143 - 5076231
Alignment:
| Q |
9 |
gaactatattataatgagtatttggttttgttaagcttattttataacactttattagtgttgctcccaaatcagttagtgttagaagc |
97 |
Q |
| |
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||||| ||| ||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
5076143 |
gaactgtataataatgagtatttagttttgttaggcttgttttataatgttttattagtgttgctcccgaatcagttagtgttagaagc |
5076231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 750
Target Start/End: Complemental strand, 27283258 - 27283186
Alignment:
| Q |
677 |
aatgaaatatcatcacttttttcttatccctttattcactgttattaagctatatgattttgtaggtccaatca |
750 |
Q |
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||||||||| || | ||||||| |||||||||||| ||| ||| ||||| |||||||||||| ||||| ||||| |
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| T |
27283258 |
aatgaaataccacccctttttttttatccctttat-caccgttcttaagttatatgattttggaggtcaaatca |
27283186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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