View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5978-Insertion-2 (Length: 912)
Name: NF5978-Insertion-2
Description: NF5978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5978-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 815; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 815; E-Value: 0
Query Start/End: Original strand, 20 - 912
Target Start/End: Complemental strand, 43909553 - 43908660
Alignment:
| Q |
20 |
aacaacaatgataatgaaacatcaatgataacaaccaagtcttatcttactacatgtaaaattgcaaggcgttcttatcagtcttatttttatattaggg |
119 |
Q |
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| T |
43909553 |
aacaacaatgataatgaaacatcaatgataacaaccaagtcttatcttactacatgtaaaattgcaaggcgttcttatcagtcttatttttatattaggg |
43909454 |
T |
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| Q |
120 |
cattgatagtttgaaaggaaagtgatctacaaattgtgaagtaaagaatgtcattgtgtgt--attgtaataatatattgcttataatggcccatattgc |
217 |
Q |
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| T |
43909453 |
cattgatagtttgaaaggaaagtgatctacaaattgtgaagtaaagaatgtcattgtgtgtgtattgtaataatatattgcttataatggcccatattgc |
43909354 |
T |
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| Q |
218 |
atgaacttggtcattgaatgttgaaaattacacacaaaaaccttgaatgtgtctttttcggttaagttagttcacacattacaaacctttgggactaatt |
317 |
Q |
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| T |
43909353 |
atgaacttggtcattgaatgttgaaaattacacacaaaaaccttgaatgtgtctttttcggttaagttagttcacacattacaaacctttgggactaatt |
43909254 |
T |
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| Q |
318 |
caatcagcaaaatagacattcaaggactaatttgatggctaaatgcatgtttggggatcatgtgtgtgattttcatgacttcatctttccattcatgtac |
417 |
Q |
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| T |
43909253 |
caat-agcaaaatagacattcaaggattaatttgatggctaaatgcatgtttggggatcatgtgtgtgattttcatgatttcatctttccattcatgtac |
43909155 |
T |
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| Q |
418 |
tattatgactgatgtggtatctttcaaagactcgtttgctgttcatttatttattagtgacaaaaattgtagaaaaattaatcagtgagaaaagacacaa |
517 |
Q |
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| T |
43909154 |
tattatgactgatgtgctatctttcaatgactcgtttgctgttcatttatttattagtgacaaaaatcgtagaaaaattaatcagcgagaaaagacacaa |
43909055 |
T |
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| Q |
518 |
ctaagattgtatcactattatcacaaaatatatattagattgctgaaaatcctctcannnnnnnattagccaacagttgcggccatagaagctggaaaag |
617 |
Q |
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| T |
43909054 |
ctatgattgtatcactattatcacaaaatatatattagattgctgaaaatcctctcatttttttattagccaacagttgcggccatagaagctggaaaag |
43908955 |
T |
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| Q |
618 |
acatagctttggccaataaagagacactaattgccggaggtccttttgtccttcctcttgcccggaagcataatgtaaaaatacttcctgctgattccga |
717 |
Q |
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| T |
43908954 |
acatagctttggccaataaagagacactaattgccggaggtccttttgtccttcctcttgcccggaagcataatgtaaaaatacttcctgctgattccga |
43908855 |
T |
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| Q |
718 |
acattctgctatttttcaggtacaaaatcacatactgcattacaaaatttgtgtgtgcaacaagagtagtggactatagataccctggcttatatatttc |
817 |
Q |
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| T |
43908854 |
acattctgctatttttcaggtacaaaatcacatactgcattacaaaatttgtgtgtgtaacaagagtagtggactatagataccctggcttatatatttc |
43908755 |
T |
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| Q |
818 |
acatattatactctggcctcaacatcttttttattaaacttgggcaattatttcatcacctgcttcatttattaatggaaaaactatttttcgct |
912 |
Q |
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| T |
43908754 |
acatattatactctggcctcaacatcttttttattaaactcgggcaattatttcatcacctgcttcatttattaatagaaaaactatttttcgct |
43908660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 585 - 739
Target Start/End: Original strand, 3633540 - 3633694
Alignment:
| Q |
585 |
agccaacagttgcggccatagaagctggaaaagacatagctttggccaataaagagacactaattgccggaggtccttttgtccttcctcttgcccggaa |
684 |
Q |
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|||||||||| ||||| || ||||| || ||||||||||| || || || ||||||||| | ||||| ||||| ||||||| ||||||||||| | || |
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| T |
3633540 |
agccaacagtggcggcgattgaagcagggaaagacatagcattagctaacaaagagacaatgattgctggaggcgcttttgttcttcctcttgctcacaa |
3633639 |
T |
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| Q |
685 |
gcataatgtaaaaatacttcctgctgattccgaacattctgctatttttcaggta |
739 |
Q |
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| T |
3633640 |
gaataacatcaaaattcttccggcagattcagaacattctgccatttttcaggta |
3633694 |
T |
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