View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5978-Insertion-3 (Length: 877)
Name: NF5978-Insertion-3
Description: NF5978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5978-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 726; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 9 - 798
Target Start/End: Original strand, 44461243 - 44462029
Alignment:
| Q |
9 |
tataaaaccatgaaaccttcctctaccatatcctcgtggttgcacacaacaatcaataaaaacccaactccgagaagaacaagaaaaataagtgacaacn |
108 |
Q |
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| T |
44461243 |
tataaaaccatgaaaccttcctctaccatatcctcgtggttgcacacaacaatcaataaaaacccaactccgagaagaacaagaaaaataagtgacaaca |
44461342 |
T |
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| Q |
109 |
nnnnnnnnnntacatcatgacaaaactcttctcggttttggttatctgtgtgattgtattggcacaccaaacagtcgcacaagaaaccaaaggtaaagat |
208 |
Q |
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| T |
44461343 |
aaaaaaaaac-acatcatgacaaaactcttctcggttttggttatctgtgtgattgtattggcacaccaaacagtcgcacaagaaaccaaaggtaaagat |
44461441 |
T |
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| Q |
209 |
ttaatcacaagggtatgccagctagcacagaaaaacagtgacctctgtgttgaagttctgtcatccgacccaaaatccgcaaacgcagacgacattaatg |
308 |
Q |
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| T |
44461442 |
ttaatcacaagggtatgccagctagcacagaaaaacagtgacctctgtgttgaagttctgtcatccgacccaaaatccgcaaacgcagacgacattaatg |
44461541 |
T |
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| Q |
309 |
atttggcaattatagcactaagagttgctgctagaaatgcttctgcaatgttaaacgacgtgaaatcaatgattgatgatgctaatttagaccctgaagt |
408 |
Q |
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| T |
44461542 |
atttggcaattatagcactaagagttgctgctagaaatgcttctgcaatgttaaacgacgtgaaatcaatgattgatgatgctaatttagaccctgaagt |
44461641 |
T |
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| Q |
409 |
tcaacaaggtttggctgattgcaaagaaaatatattggatgctgagtctcaacttgaagacactattgctgctttgttggttgaatctgatgttgatagt |
508 |
Q |
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| T |
44461642 |
tcaacaaggtttggctgattgcaaagaaaatatattggatgctgagtctcaacttgaagacactattgctgctttgttggttgaatctgatgttgatagt |
44461741 |
T |
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| Q |
509 |
cagaaatggttgaaggctgctttggctgctattactacctgcgataattctattcctggaaatgatgatgttttgtctgtcaagagtagaaccttccgca |
608 |
Q |
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| T |
44461742 |
cagaaatggttgaaggctgctttggctgctattactacctgcgataattctattcctggaaatgatgatgttttgtctgtcaagagtagaatcttccgca |
44461841 |
T |
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| Q |
609 |
gactcaccaacattgttgttcttattaccagggccttgcctaaacgtacttcttctgtccaaccagtcaaagtgtaatttaaatcatctttgctctgtgc |
708 |
Q |
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| T |
44461842 |
gactcaccaacattgttgttcttattaccagggccttgcctaaacgtactccttctgcccaaccagtcaaagtgtaatttaaatcatctttgctctgtgc |
44461941 |
T |
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| Q |
709 |
tatatattattgatcaagctcatatccttgttaaattttatgtgaatcttatatatatgattctatattattattaaagagtgttgttaa |
798 |
Q |
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| T |
44461942 |
--tatattattgatcaagctcatatccttgttaaattttatgtgaatcttatatatatgattctatattattattaaagagtgttgttaa |
44462029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 838 - 877
Target Start/End: Original strand, 44462068 - 44462107
Alignment:
| Q |
838 |
atgtgagaagaatgcaaaacaaaacaaaccggaaaacttg |
877 |
Q |
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| T |
44462068 |
atgtgagaagaatgcaaaacaaaacaaaccggaaaacttg |
44462107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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