View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5978_high_1 (Length: 901)
Name: NF5978_high_1
Description: NF5978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5978_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 718; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 97 - 886
Target Start/End: Complemental strand, 44462029 - 44461243
Alignment:
| Q |
97 |
ttaacaacactctttaataataatatagaatcatatatataagattcacataaaatttaacaaggatatgagcttgatcaataatatatagcacagagca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44462029 |
ttaacaacactctttaataataatatagaatcatatatataagattcacataaaatttaacaaggatatgagcttgatcaataatata--gcacagagca |
44461932 |
T |
|
| Q |
197 |
aagatgatttaaattacactttgactggttggacagaagaagtacgtttaggcaaggccctggtaataagaacaacaatgttggtgagtctgcggaaggt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44461931 |
aagatgatttaaattacactttgactggttgggcagaaggagtacgtttaggcaaggccctggtaataagaacaacaatgttggtgagtctgcggaagat |
44461832 |
T |
|
| Q |
297 |
tctactcttgacagacaaaacatcatcatttccaggaatagaattatcgcaggtagtaatagcagccaaagcagccttcaaccatttctgactatcaaca |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44461831 |
tctactcttgacagacaaaacatcatcatttccaggaatagaattatcgcaggtagtaatagcagccaaagcagccttcaaccatttctgactatcaaca |
44461732 |
T |
|
| Q |
397 |
tcagattcaaccaacaaagcagcaatagtgtcttcaagttgagactcagcatccaatatattttctttgcaatcagccaaaccttgttgaacttcagggt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44461731 |
tcagattcaaccaacaaagcagcaatagtgtcttcaagttgagactcagcatccaatatattttctttgcaatcagccaaaccttgttgaacttcagggt |
44461632 |
T |
|
| Q |
497 |
ctaaattagcatcatcaatcattgatttcacgtcgtttaacattgcagaagcatttctagcagcaactcttagtgttataattgccaaatcattaatgtc |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44461631 |
ctaaattagcatcatcaatcattgatttcacgtcgtttaacattgcagaagcatttctagcagcaactcttagtgctataattgccaaatcattaatgtc |
44461532 |
T |
|
| Q |
597 |
gtctgcgtttgcggattttgggtcggatgacagaacttcaacgcagaggtcactgtttttctgtgctagctggcatacccttgtgattaaatctttacct |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44461531 |
gtctgcgtttgcggattttgggtcggatgacagaacttcaacacagaggtcactgtttttctgtgctagctggcatacccttgtgattaaatctttacct |
44461432 |
T |
|
| Q |
697 |
ttggtttcttgtgcgactgtttggtgtgccaatacaatcacacagataaccaaaaccgagaagagttttgtcatgatgtannnnnnnnnnngttgtcact |
796 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44461431 |
ttggtttcttgtgcgactgtttggtgtgccaatacaatcacacagataaccaaaaccgagaagagttttgtcatgatgt-gttttttttttgttgtcact |
44461333 |
T |
|
| Q |
797 |
tatttttcttgttcttctcggagttgggtttttattgattgttgtgtgcaaccacgaggatatggtagaggaaggtttcatggttttata |
886 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44461332 |
tatttttcttgttcttctcggagttgggtttttattgattgttgtgtgcaaccacgaggatatggtagaggaaggtttcatggttttata |
44461243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 44462114 - 44462068
Alignment:
| Q |
11 |
cataggacaagttttccggtttgttttgttttgcattcttctcacat |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44462114 |
cataggacaagttttccggtttgttttgttttgcattcttctcacat |
44462068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University