View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5978_low_3 (Length: 230)
Name: NF5978_low_3
Description: NF5978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5978_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 27227868 - 27227670
Alignment:
| Q |
13 |
acatcatcatcgcacataacacgtaaatcatcacacattctggggagattaactcggaacctcttcccaaatccacaatccccattgaacttcttcctaa |
112 |
Q |
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| T |
27227868 |
acatcatcatcgcacataacatgtaaatcatcacacattctggggagattaactcggaacatcttcccaaatccacaatccccattgaatttcttcctaa |
27227769 |
T |
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| Q |
113 |
tgactaacaagcttctaacactaactgatttgggagcaacactaataaagtgttataaaataagcttaacaaaaccaaatactcattataatatagttc |
211 |
Q |
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| T |
27227768 |
tgactaacaagcttctaacactaactgatttgggagcaacactaataaagtgttataaaataagcttaacaaaaccaaatactcattataatatagttc |
27227670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 5076231 - 5076143
Alignment:
| Q |
123 |
gcttctaacactaactgatttgggagcaacactaataaagtgttataaaataagcttaacaaaaccaaatactcattataatatagttc |
211 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||| ||| ||||| |
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| T |
5076231 |
gcttctaacactaactgattcgggagcaacactaataaaacattataaaacaagcctaacaaaactaaatactcattattatacagttc |
5076143 |
T |
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