View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5979_low_1 (Length: 525)
Name: NF5979_low_1
Description: NF5979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5979_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 40407063 - 40407395
Alignment:
| Q |
1 |
caccttccccagttataatttgcaaatacttgagct-aagagacacatatatcaaactttataaatttaaacatgattcacttaaaagttctttagattt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40407063 |
caccttccccagttataatttgcaaatacttgagcttaagagacacatatatcaaactttataaatttaaacatgattcacttaaa-gttctttagattt |
40407161 |
T |
|
| Q |
100 |
atcaaatatttttcagctccaagttcttttgtggatatttcttctaagcccataataggtaagacaccagcttgtgtaccgtcgctatcgctttccattt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40407162 |
atcaaatatttttcagctccaagttcttttgtggatatttcttctaagcccataataggtaagacaccagcttgtgtaccgtcgctatcgctttccattt |
40407261 |
T |
|
| Q |
200 |
ctccatcaagacttaatccttcaattcttgctccaataggatctcctagcattcccacttctattttttccaaaaacaaataaagaaattaatcaaacta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40407262 |
ctccatcaagacttaatccttcaattcttgctccaataggatctcctagcattcccacttctattttttccaaaaacaaataaagaaattaatcaaacta |
40407361 |
T |
|
| Q |
300 |
attaaatcaaaatacacgttgttttgatttcttt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
40407362 |
attaaatcaaaatacacgttgttttgatttcttt |
40407395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 371 - 519
Target Start/End: Original strand, 40407433 - 40407581
Alignment:
| Q |
371 |
ttagggcatccatgttttttgttatgattataaacctagctatgtgctgaggaaaactcgtaaacaccaacacacctacggatcttagatctaacataag |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40407433 |
ttagggcatccatgttttttgttatgattataaacctagctatgtgttgaggaaaactcgtaaacgccaacacacctacggatcttagatctaacataag |
40407532 |
T |
|
| Q |
471 |
tgtcacgaaacatattttttgttattgaagtatatatcatattcttgga |
519 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
40407533 |
tgtcaccaaacatattttttgttattgaagtatatatcatcttattgga |
40407581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University