View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5979_low_4 (Length: 238)

Name: NF5979_low_4
Description: NF5979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5979_low_4
NF5979_low_4
[»] chr3 (9 HSPs)
chr3 (2-222)||(24362040-24362260)
chr3 (79-219)||(24364805-24364942)
chr3 (79-222)||(24354687-24354827)
chr3 (79-222)||(24369702-24369842)
chr3 (79-222)||(24344415-24344555)
chr3 (86-222)||(24313852-24313985)
chr3 (86-222)||(24358349-24358482)
chr3 (79-222)||(24351602-24351742)
chr3 (15-80)||(24344581-24344646)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 24362260 - 24362040
Alignment:
Q  2 ggcctccttccagtcttctgatttggccattcatccaaaatttgacatgattcatcatcactatgatcaacattttcatcatagtctatttctactgcat 101  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24362260 ggcctccttccagtcttttgatttggccattcatccaaaatttgacatgattcatcatcactatgatcaacattttcatcatagtctatttctactgcat 24362161  T
Q  102 tcttgccaagtatgtgtacaaggaacttagaagttccttcttcatatttaaacaacaccaaagagccatgtccaagagagtaattttcagtaaaagtttt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  24362160 tcttgccaagtatgtgtacaaggaacttagaagttccttcttcataattaaacaacaccaaaaacccatgtccaagagagtaattttcagtaaaagtttt 24362061  T
Q  202 ccaacccctttcaaaccaaat 222  Q
    ||||||| |||| ||||||||    
T  24362060 ccaacccttttcgaaccaaat 24362040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 24364805 - 24364942
Alignment:
Q  79 atcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcatatttaaacaacaccaaagagccatgtccaaga 178  Q
    |||||| ||||||||||||||||||| |||||||||   ||||   ||||| ||||||||||    ||||| ||||| ||||||| |||||||| |||||    
T  24364805 atcataatctatttctactgcattctggccaagtattactacatcaaacttggaagttccttt---atattcaaacatcaccaaacagccatgttcaaga 24364901  T
Q  179 gagtaattttcagtaaaagttttccaacccctttcaaacca 219  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  24364902 gagtaattttcagtaaaagttttccaacccttttcaaacca 24364942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 24354827 - 24354687
Alignment:
Q  79 atcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcatatttaaacaacaccaaagagccatgtccaaga 178  Q
    |||||||||||||||||||||||||| ||||||||||||||||   ||||| |||  |||||    |||||| |||| ||||||| | ||||||||||||    
T  24354827 atcatagtctatttctactgcattctggccaagtatgtgtacatcaaactttgaatctccttt---atatttgaacaccaccaaacaaccatgtccaaga 24354731  T
Q  179 gagtaattttcagtaaaagttttccaacccctttcaaaccaaat 222  Q
    |||||||||||| |||||  |||||||||| |||||||||||||    
T  24354730 gagtaattttcaataaaatatttccaacccttttcaaaccaaat 24354687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 24369842 - 24369702
Alignment:
Q  79 atcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcatatttaaacaacaccaaagagccatgtccaaga 178  Q
    ||||||||||||||||| ||||||||||||||||||   ||||   |||||  |||||||||    ||||| ||||| ||||||  | ||||||||||||    
T  24369842 atcatagtctatttctaatgcattcttgccaagtattactacatcaaacttgaaagttccttt---atattcaaacaccaccaagcaaccatgtccaaga 24369746  T
Q  179 gagtaattttcagtaaaagttttccaacccctttcaaaccaaat 222  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  24369745 gagtaattttcagtaaaagttttccaacccttttcaaaccaaat 24369702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 24344555 - 24344415
Alignment:
Q  79 atcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcatatttaaacaacaccaaagagccatgtccaaga 178  Q
    |||||||||||||||||||||||||   ||||||||   ||||   || || ||||||||||    ||||| ||||| ||||||||||||||||||||||    
T  24344555 atcatagtctatttctactgcattccgaccaagtattactacatcaaatttcgaagttccttt---atattcaaacaccaccaaagagccatgtccaaga 24344459  T
Q  179 gagtaattttcagtaaaagttttccaacccctttcaaaccaaat 222  Q
    ||||||||||||||||||  |||||||||| |||||||||||||    
T  24344458 gagtaattttcagtaaaatatttccaacccttttcaaaccaaat 24344415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 24313985 - 24313852
Alignment:
Q  86 tctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcatatttaaacaacaccaaagagccatgtccaagagagtaat 185  Q
    |||||||||| |||||||| | |||||||| |||||   ||||| ||||||||||    |||||| ||||  |||||| | |||||||||||||||||||    
T  24313985 tctatttctagtgcattctggtcaagtatgagtacatcaaactttgaagttccttt---atatttgaacattaccaaacacccatgtccaagagagtaat 24313889  T
Q  186 tttcagtaaaagttttccaacccctttcaaaccaaat 222  Q
    |||||||||||  ||||||||||||||||||||||||    
T  24313888 tttcagtaaaaaatttccaacccctttcaaaccaaat 24313852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 24358482 - 24358349
Alignment:
Q  86 tctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcatatttaaacaacaccaaagagccatgtccaagagagtaat 185  Q
    ||||||||||||||||||  |||||  |||||||||   ||||| ||||||| ||    ||||| |||||  ||||||||||||||||||||||||||||    
T  24358482 tctatttctactgcattccggccaaaaatgtgtacatcaaacttggaagttctttt---atattcaaacacaaccaaagagccatgtccaagagagtaat 24358386  T
Q  186 tttcagtaaaagttttccaacccctttcaaaccaaat 222  Q
    |||||||||||  |||||||||| |||||||||||||    
T  24358385 tttcagtaaaatatttccaacccttttcaaaccaaat 24358349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 24351742 - 24351602
Alignment:
Q  79 atcatagtctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcatatttaaacaacaccaaagagccatgtccaaga 178  Q
    ||||||||||||||| || ||||| || ||||||||  |||||   ||||| ||||||||||    ||||||||||| ||||||| | ||||||   |||    
T  24351742 atcatagtctatttcaaccgcattattaccaagtattagtacatcaaacttggaagttccttt---atatttaaacaccaccaaacatccatgttgtaga 24351646  T
Q  179 gagtaattttcagtaaaagttttccaacccctttcaaaccaaat 222  Q
    ||||||||||||||||||  |||||||||| |||||||||||||    
T  24351645 gagtaattttcagtaaaatgtttccaacccttttcaaaccaaat 24351602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 24344646 - 24344581
Alignment:
Q  15 tcttctgatttggccattcatccaaaatttgacatgattcatcatcactatgatcaacattttcat 80  Q
    |||||||||||||||||||||| ||||| | |  ||||||||||||||||||| ||||||| ||||    
T  24344646 tcttctgatttggccattcatctaaaatctcaactgattcatcatcactatgaccaacattgtcat 24344581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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