View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5979_low_5 (Length: 214)
Name: NF5979_low_5
Description: NF5979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5979_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 26417670 - 26417855
Alignment:
| Q |
11 |
catcatcaaaatatccgtaaaaaggaaacaccataaaccatcacagcagaccaacattagacctccatagtcactacctccaccatcatccgtaatccaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26417670 |
catcttcaaaatatccgtaaaaaggaaacaccataaaccatcacagcagaccaacattagacctccatagtcactacctccaccatcatccgtaatccaa |
26417769 |
T |
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| Q |
111 |
aaaccaaaccataaccagaaactaactagtacccatcttcttgaagccagtaactctccttcggcattctcattcaacccataatc |
196 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26417770 |
aaaccaaaccacaaccagaaactaactagtacccatcttcttgaagccagtaactctccttcggcattctcattcaacccataatc |
26417855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 27983292 - 27983123
Alignment:
| Q |
12 |
atcatcaaaatatccgtaaaaaggaaacaccataaaccatcacagcagaccaacattagacctccatagtcactacctccaccatcatccgtaatccaaa |
111 |
Q |
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|||||||||||| || ||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||| || | ||| | | |
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| T |
27983292 |
atcatcaaaatagccctaaaatggaaacaccataaaccatcacagcaaaccaaccttagacctcca---------------ccatcacccttcatcgaga |
27983208 |
T |
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| Q |
112 |
aaccaaaccataaccagaaactaactagtacccatcttcttgaagccagtaactctccttcggcattctcattcaacccataatc |
196 |
Q |
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|||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||| |||||||| |
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| T |
27983207 |
aaccaaaccacaaccagaaactaactagtacccttcctcttgaaggcagtaactctccttcaacattctcattcacaccataatc |
27983123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 28069822 - 28069653
Alignment:
| Q |
12 |
atcatcaaaatatccgtaaaaaggaaacaccataaaccatcacagcagaccaacattagacctccatagtcactacctccaccatcatccgtaatccaaa |
111 |
Q |
| |
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|||||||||||| || ||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||| || | ||| | | |
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| T |
28069822 |
atcatcaaaatagccctaaaatggaaacaccataaaccatcacagcaaaccaaccttagacctcca---------------ccatcacccttcatcgaga |
28069738 |
T |
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| Q |
112 |
aaccaaaccataaccagaaactaactagtacccatcttcttgaagccagtaactctccttcggcattctcattcaacccataatc |
196 |
Q |
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|||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||| |||||||| |
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| T |
28069737 |
aaccaaaccacaaccagaaactaactagtacccttcctcttgaaggcagtaactctccttcaacattctcattcacaccataatc |
28069653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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