View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_high_14 (Length: 324)
Name: NF5980_high_14
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 28945326 - 28945014
Alignment:
| Q |
1 |
ctcaaacagtactactttctctagcacatgcacacttctttgcccttagcaaaaccaagcaaaaaacaatacacaatatagtgataatgatggagaaagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28945326 |
ctcaaacagtactactttctctagcacatgcacacttctttgcccttagcaaaaccaagcaaaaaacaatacacaatatagtgataatgatggagaaagg |
28945227 |
T |
|
| Q |
101 |
aaatgctactgtagtttcagctacaaggtctccaatgcaggttatgatggcacnnnnnnnnnnnnnnnnnnnaactggtgaggagttagaaggaaacaca |
200 |
Q |
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| T |
28945226 |
aaatgctactgtagtttcagctacaaggtctccaatgcaggttatgatggcacctgctgctgctgctgctgcaactggtgaggagttggaaggaaacaca |
28945127 |
T |
|
| Q |
201 |
acttctttcttacgcactgctgagacattcctgcgtcttcttccaattggtctttgtgtagcagcacttgttcttatgcttaagaattccgaagaaaatg |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28945126 |
acttccttcttacgcactgctgagacattcctgcgtcttcttccaattggtctttgtgtagcagcacttgttcttatgcttaagaattccgaagaaaatg |
28945027 |
T |
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| Q |
301 |
attatggctctgt |
313 |
Q |
| |
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||||||||||||| |
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| T |
28945026 |
attatggctctgt |
28945014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 29306849 - 29306921
Alignment:
| Q |
228 |
ttcctgcgtcttcttccaattggtctttgtgtagcagcacttg---ttcttatgcttaagaattccgaagaaa |
297 |
Q |
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||||||||||| |||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||| |
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| T |
29306849 |
ttcctgcgtctgcttccaattggtctctgtgtagcatcacttgtaattcttatgcttaagaattcccaagaaa |
29306921 |
T |
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