View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5980_high_16 (Length: 287)
Name: NF5980_high_16
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 8131260 - 8130979
Alignment:
| Q |
5 |
atggacatcatcattaattcgctttacagtaataaagatattttcctcagggaactgatttcaaatgcttctgatgtaagctcattctcttttaagtata |
104 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8131260 |
atggatattatcatcaattcgctttacagtaataaggatattttcctcagggaactgatttcaaatgcttctgatgtaagctcattctcttttaagtata |
8131161 |
T |
|
| Q |
105 |
cagatatatgctcattatgtactttttgagttttgaattggtgtgtttggttttgcggtgacaaaaattg--------------attatggcataaagtg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8131160 |
cagatatatgctcattatgtactttttgagttttgaatcggtgtgtttggttttgcggtgacaaaaattgattaggtaaaattgattatggcataaagtg |
8131061 |
T |
|
| Q |
191 |
agttgaatgtagtctagtttatatttgtattcattgagtctaaaaattagttttagaaaccaaagctttacattctaacttc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8131060 |
agttgaatgtagtctagtttatatttgtatacattgagtctaaaaattagttttagaaaccaaagctttacattctaacttc |
8130979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 25061392 - 25061360
Alignment:
| Q |
145 |
gtgtgtttggttttgcggtgacaaaaattgatt |
177 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
25061392 |
gtgtgtttggttctgcggtgacaaaaattgatt |
25061360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 34571085 - 34571117
Alignment:
| Q |
145 |
gtgtgtttggttttgcggtgacaaaaattgatt |
177 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
34571085 |
gtgtgtttggttatgcggtgacaaaaattgatt |
34571117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 43541582 - 43541614
Alignment:
| Q |
145 |
gtgtgtttggttttgcggtgacaaaaattgatt |
177 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
43541582 |
gtgtgtttggttatgcggtgacaaaaattgatt |
43541614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 19649306 - 19649250
Alignment:
| Q |
145 |
gtgtgtttggttttgcggtgacaaaaattgattatggcataaagtgagttgaatgta |
201 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
19649306 |
gtgtgtttggttgtgcggtggaaaaaattgattttggttaaaagtgagttgaatgta |
19649250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 7087202 - 7087242
Alignment:
| Q |
135 |
ttttgaattggtgtgtttggttttgcggtgacaaaaattga |
175 |
Q |
| |
|
|||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
7087202 |
ttttgactttgtgtgtttggttttgtggtgacaaaaattga |
7087242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 10054952 - 10054984
Alignment:
| Q |
145 |
gtgtgtttggttttgcggtgacaaaaattgatt |
177 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
10054952 |
gtgtgtttggttttgcggtgacaaaagttgatt |
10054984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 51285753 - 51285721
Alignment:
| Q |
145 |
gtgtgtttggttttgcggtgacaaaaattgatt |
177 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
51285753 |
gtgtgtttggttttgcggtgagaaaaattgatt |
51285721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University