View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_high_20 (Length: 250)
Name: NF5980_high_20
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 35461276 - 35461039
Alignment:
| Q |
13 |
aatattggttacacagataaggaaattgttggttttcagattatgttttgtaaagatgaagattttggctatagaattgaggtcacccattcactgtcat |
112 |
Q |
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| T |
35461276 |
aatattggttacacagataaggaaattgttggttttcagattatgttttgtaaagatgaagattttggcaatagaattgaggtcaaccgttcactgtcat |
35461177 |
T |
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| Q |
113 |
gaataccgaatagggagcattataatgtaaatgttgtttcgctctaaggctctggattttcattagttacaatatatatttaggtttttgagccatgcat |
212 |
Q |
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| T |
35461176 |
gaataccgaatagggagcattataatgtaaatgttgtttcgctctaaggctctggattttcattagttacaatatatatttaggtttttgagccatgcat |
35461077 |
T |
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| Q |
213 |
tgatgttgtatatgatttatttgaaaacaacatattat |
250 |
Q |
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| T |
35461076 |
tgatgttgtatatgatttatttgaaaacaacatattat |
35461039 |
T |
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