View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_high_25 (Length: 206)
Name: NF5980_high_25
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 37888510 - 37888337
Alignment:
| Q |
18 |
gaaatgaatagatgagatattctcaaacgtacatacnnnnnnnnaatatttcatatattcatttcaagaatgattttatatccaatatatagtataaaat |
117 |
Q |
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| T |
37888510 |
gaaatgaatagatgagatattctcaaacgtacatacttttttttaatatttcatatattcatttcaagaatgattttatatccaatatatagtataaaat |
37888411 |
T |
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| Q |
118 |
taaaatgtgcaaactcatttgaatctttaagattaggtcatcaccgttcccaatttcaagcacgactaagtatt |
191 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
37888410 |
taaaatgtgcaaactcatttgaatctttaagatcaggtcatcaccgttcccaatttcaagcacgactaaatatt |
37888337 |
T |
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