View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5980_high_3 (Length: 502)

Name: NF5980_high_3
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5980_high_3
NF5980_high_3
[»] chr1 (3 HSPs)
chr1 (17-200)||(47288836-47289018)
chr1 (297-491)||(47289106-47289283)
chr1 (203-239)||(47289012-47289048)
[»] chr4 (3 HSPs)
chr4 (19-160)||(15664320-15664461)
chr4 (18-159)||(30785512-30785653)
chr4 (17-83)||(29672256-29672322)
[»] scaffold0179 (2 HSPs)
scaffold0179 (168-239)||(33065-33136)
scaffold0179 (297-380)||(33196-33283)
[»] chr3 (1 HSPs)
chr3 (28-83)||(43487262-43487317)
[»] chr8 (2 HSPs)
chr8 (20-136)||(2543098-2543213)
chr8 (36-136)||(2533533-2533632)
[»] chr7 (1 HSPs)
chr7 (17-125)||(42675323-42675430)
[»] chr5 (2 HSPs)
chr5 (17-103)||(33318283-33318369)
chr5 (20-80)||(5033548-5033608)
[»] chr2 (1 HSPs)
chr2 (16-136)||(29150383-29150503)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 47288836 - 47289018
Alignment:
Q  17 aattagctaccccaataaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgat 116  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47288836 aattagctaccc-aataaaatatatttagctaccacaaatgtgcttatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgat 47288934  T
Q  117 agatgtattatgtcttatttcgaaaattttgatcccataaacaaggataattttaggtagacaccccttttaaaccatacacac 200  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  47288935 agatgtattataccttatttcgaaaattttgatcccataaacaaggataattttaggtagacaccctttttgaaccatacacac 47289018  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 297 - 491
Target Start/End: Original strand, 47289106 - 47289283
Alignment:
Q  297 tctgaaactttgtgcccttgctctcacttccatccctctttccctaagtccggg-atgaagcccaccgtcgttgtctctccaactcgctttgtctcctcc 395  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |||||||||| ||||                  ||||||||||||    
T  47289106 tctgaaactttgtgcccttgctctcagttcgatccctctttccctaagttcggggatgaagcccatcgtc------------------tttgtctcctcc 47289187  T
Q  396 caaccgctcgatctcctctcactctcttcgtttcctcatggacattggtctcattcgtcgccgtattccctcacttgcgtcgacaactcaatctct 491  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  47289188 caaccgctcgatctcctcccactctcttcgtttcctcatggacattggtctcattcaccgccgtgttccctcacttgcgtcgacaactcaatctct 47289283  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 47289012 - 47289048
Alignment:
Q  203 tacacacatcccatgtggcatcatttgccatagtgga 239  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  47289012 tacacacatcctatgtggcatcatttgtcatagtgga 47289048  T

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Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 15664461 - 15664320
Alignment:
Q  19 ttagctaccccaataaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgatag 118  Q
    ||||||||| |||||||||||||||||||||| ||||||   |||||||||||||  |||||||| |  |||| |||||||||||| | |||||||||||    
T  15664461 ttagctaccacaataaaatatatttagctaccgcaaatgagtttatttgtcaaaagctagtagaaataggaaaatcaaaagatatttacttgtttgatag 15664362  T
Q  119 atgtattatgtcttatttcgaaaattttgatcccataaacaa 160  Q
    |||| |||||||||||||  ||| ||||||||||||||||||    
T  15664361 atgttttatgtcttattttaaaacttttgatcccataaacaa 15664320  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 30785653 - 30785512
Alignment:
Q  18 attagctaccccaataaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgata 117  Q
    ||||||||||||||||| |||||||||||||||  |||      |||||||||||||||||||||| |  ||||| ||||| ||||| | |||||| |||    
T  30785653 attagctaccccaataatatatatttagctaccgtaaaaaaatctatttgtcaaaaattagtagaaataggaaagccaaaatatattcacttgtttaata 30785554  T
Q  118 gatgtattatgtcttatttcgaaaattttgatcccataaaca 159  Q
    ||| ||||  || |||||| || | |||||||| | ||||||    
T  30785553 gatatattccgtattattttgacacttttgatctcttaaaca 30785512  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 29672322 - 29672256
Alignment:
Q  17 aattagctaccccaataaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaa 83  Q
    |||||||||||||||||| |||||||  |||||||||||||   |||||||| ||||| || |||||    
T  29672322 aattagctaccccaataatatatattatgctaccacaaatgagtttatttgttaaaaactattagaa 29672256  T

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Target: scaffold0179 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 33065 - 33136
Alignment:
Q  168 tttaggtagacaccccttttaaaccatacacactctacacacatcccatgtggcatcatttgccatagtgga 239  Q
    |||| ||||||| ||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  33065 tttacgtagacatcccttttgaaccatacacaccatacacacatcccatgtggcatcatttgtcatagtgga 33136  T

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Target: scaffold0179; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 33196 - 33283
Alignment:
Q  297 tctgaaactttgtgcc---cttgctctcacttccatccctctttccctaagtccggg-atgaagcccaccgtcgttgtctctccaact 380  Q
    ||||||||||||||||   |||| ||||  |||||||||||||||||||| | |||| ||||||||||||||| ||||||||||||||    
T  33196 tctgaaactttgtgcctcccttgttctcggttccatccctctttccctaaattcggggatgaagcccaccgtcattgtctctccaact 33283  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 43487317 - 43487262
Alignment:
Q  28 ccaataaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaa 83  Q
    ||||||| ||||||||||||||||||||||  |||||||||| |||||||||||||    
T  43487317 ccaataatatatatttagctaccacaaatgagattatttgtcgaaaattagtagaa 43487262  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 2543213 - 2543098
Alignment:
Q  20 tagctaccccaataaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgataga 119  Q
    |||||||| ||||||  ||||| ||| ||||||||| |   |||||| ||||||| ||||| || | |||||||||||||| ||  | ||||||||||||    
T  2543213 tagctacctcaataatgtatatgtagttaccacaaacgaatttatttatcaaaaactagtaaaa-taagaaagtcaaaagacatctacttgtttgataga 2543115  T
Q  120 tgtattatgtcttattt 136  Q
    |||||| ||||||||||    
T  2543114 tgtattttgtcttattt 2543098  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 2533632 - 2533533
Alignment:
Q  36 atatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgatagatgtattatgtcttatt 135  Q
    |||||| ||| |||||||||||   |||||| ||||||| ||||| || | |||||||| ||||| ||  | |||||||||||||||||| ||| |||||    
T  2533632 atatatatagttaccacaaatgaatttatttatcaaaaactagtaaaaataagaaagtc-aaagacatctacttgtttgatagatgtattttgttttatt 2533534  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 42675430 - 42675323
Alignment:
Q  17 aattagctaccccaataaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttgat 116  Q
    |||||||||||||||| | ||||||||| ||||| | | ||   |||||||||||||| |||||||| | | |||||||||||||||  | |||||||||    
T  42675430 aattagctaccccaatcatatatatttaactaccccta-tgagtttatttgtcaaaaactagtagaaattaaaaagtcaaaagatatctacttgtttgat 42675332  T
Q  117 agatgtatt 125  Q
    ||| |||||    
T  42675331 agaagtatt 42675323  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 33318369 - 33318283
Alignment:
Q  17 aattagctaccccaataaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatat 103  Q
    ||||||||||| | |||| |||||||| ||||||| |||||   |||||||||||||| |||| ||| | |||||||||||| ||||    
T  33318369 aattagctacctcgataatatatattttgctaccataaatgaatttatttgtcaaaaactagttgaaataagaaagtcaaaaaatat 33318283  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 5033548 - 5033608
Alignment:
Q  20 tagctaccccaataaaatatatttagctaccacaaatgttattatttgtcaaaaattagta 80  Q
    ||||||||||||||| |||||||||  |||||||||||   ||||||||| ||| ||||||    
T  5033548 tagctaccccaataatatatatttaaataccacaaatgagtttatttgtcgaaatttagta 5033608  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 29150383 - 29150503
Alignment:
Q  16 caattagctaccccaataaaatatatttagctaccacaaatgttattatttgtcaaaaattagtagaagtgagaaagtcaaaagatattaatttgtttga 115  Q
    ||||||||||||||| ||| || |  |||||| |||||||||   ||| |||||||||| |||||||| |  |||||   ||||||||  | ||||||||    
T  29150383 caattagctaccccagtaatatctgcttagcttccacaaatgagtttaattgtcaaaaactagtagaaataggaaagcttaaagatatccacttgtttga 29150482  T
Q  116 tagatgtattatgtcttattt 136  Q
    ||||||||||  |||||||||    
T  29150483 tagatgtatttcgtcttattt 29150503  T

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