View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_high_6 (Length: 431)
Name: NF5980_high_6
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 54606264 - 54605860
Alignment:
| Q |
20 |
tttttctgctgaatttgtacacaatttttctgcttttaggagatgttcagttttgt--agaccttgcagtttgtggtgcttcaatgcgtcactagtttca |
117 |
Q |
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| T |
54606264 |
tttttctgctgaatttgtacacaatttttctgctttgaggagatgttcagttttgtgtagaccttgcagtttgtggtgcttcaatgcgtcactagtttca |
54606165 |
T |
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| Q |
118 |
attgtagatagtaacttgttataccatagccatgttaacgaattag----tctttctttcattgcatatgacaagtaacctttgaatgagttaaagaatt |
213 |
Q |
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| T |
54606164 |
attgtagatagtaacttgttataccatagccatgttaacgaattagctagtctttctttcattccatatgacaagtaacctttgaatgagttaaagaatt |
54606065 |
T |
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| Q |
214 |
agtcaatttcctggtcatttttatgaattgttcttgggtaactaaagccagttatttaacttacctagtgaatttgagccaattatttatttacacgcac |
313 |
Q |
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| T |
54606064 |
agccaatttcttggtcatttttatgaattgttcttgggtaactaaagccatttatttagctaggctagtgaatttgagccaattatttatttacacgcac |
54605965 |
T |
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| Q |
314 |
cataagtaactatgacaggaaatttaagcatgctagtaaattgtggcctttg----ttagcccttgttatatggtattttagcgaataagctaactgctt |
409 |
Q |
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| T |
54605964 |
cataagtaactatgacagggaatttaagcatgctagtaaattgtggcctttgttaattagcccttgttatttggtattttagcgaataagctaactgctt |
54605865 |
T |
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| Q |
410 |
gttgg |
414 |
Q |
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| T |
54605864 |
gttgg |
54605860 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 34386447 - 34386501
Alignment:
| Q |
97 |
ttcaatgcgtcactagtttcaattgtagatagtaa-cttgttataccatagccat |
150 |
Q |
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| T |
34386447 |
ttcaatgtgtcactagtttcaattgtggatagtaaccttgttataccatagccat |
34386501 |
T |
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