View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_high_9 (Length: 398)
Name: NF5980_high_9
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 51933487 - 51933867
Alignment:
| Q |
1 |
ttcagttaacttttgatctttccctatcttgtagctcacaaatccatcaaaattgttcttgaatagaccagctaatttcagaagtgtatcttggtaggcc |
100 |
Q |
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| T |
51933487 |
ttcagttaacttttgatctttccctatcttgtagctcacaaatccatcaaaattgttcttgaatagaccagctaatttcagaagtgtatcttggtaggcc |
51933586 |
T |
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| Q |
101 |
ttcttttcaaaccactgcagttcatgcaagtacagttcataccttcaagattgtgatatagttgtataaaacttatatactgaatattaagtattaacta |
200 |
Q |
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| T |
51933587 |
ttcttttcaaaccactgcagttcatgcaagtacagttcataccttcaagattgtgatatagttgtataaaacttatatactgaatattaagtattaacta |
51933686 |
T |
|
| Q |
201 |
accgtgtttatggggtccaagatttcagatgggactccatctattgctgttgggatctcaagcccaaacacttcagttttaatgtatttcgcattcaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933687 |
accgtgtttatggggtccaagatttcagatgggactccatctattgctgttgggatctcaagcccaaacacttcagttttaatgtatttcgcattcaaga |
51933786 |
T |
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| Q |
301 |
gactgccagaatgaatggcatcaatgattttcctcgtgtacgctaacttgatccgattgcctgatccataactgccaaatt |
381 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933787 |
gacagccagaatgaatggcatcaatgattttcctcgtgtacgctaacttgatccgattgcctgatccataactgccaaatt |
51933867 |
T |
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