View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_low_1 (Length: 684)
Name: NF5980_low_1
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 8e-69; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 504 - 644
Target Start/End: Original strand, 27423172 - 27423312
Alignment:
| Q |
504 |
ataaccttcattgatcacaaattttccaacaaagattgttttgtgtgcatattaaagatgtgaaaccacaattttcgaatacttttaagtagtctagaga |
603 |
Q |
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| T |
27423172 |
ataaccttcattgatcacaaattttccaacaaagattgttttgtgtgcatattaaagatgtgaaaccacaatttttgaatacttttaagtagtctagaga |
27423271 |
T |
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| Q |
604 |
cattgtcttatacataagagtatcaagatgaactaaaaagg |
644 |
Q |
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| T |
27423272 |
cattgtcttatacataagagtagcaagatgaactaaaaagg |
27423312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 242 - 427
Target Start/End: Original strand, 18072487 - 18072669
Alignment:
| Q |
242 |
caaattaatgaatataactctacctcctaaactcacatacctattccgccacgaatacaacctattctcaataacctttaccatgggattccaagttaca |
341 |
Q |
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| T |
18072487 |
caaattaatgaatataactcgacctcctaaactcacatagctattccgccacgaatgcaacctat---caataacatttaccatgagatttcaagttata |
18072583 |
T |
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| Q |
342 |
actcttctgtgattttcccacaatggaagccccaaataagtgataaatgatttggtacattggaggaaattatattccccttctcc |
427 |
Q |
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| T |
18072584 |
actcttctgggattttcccacaatggaagccccaaataagtggtaaacgattgggtacattggaagaaattatattccccttctcc |
18072669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 529 - 644
Target Start/End: Original strand, 18072721 - 18072850
Alignment:
| Q |
529 |
ccaacaaagattgttttgtgtgcatattaaagatgtgaaaccacaattttcgaat--------------acttttaagtagtctagagacattgtcttat |
614 |
Q |
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| T |
18072721 |
ccaacaaagattgtattgtgagcatattaaagatgtgaaaccacaatttttgaattcgccaccttaaatacttttaagtagtctagagacattgtcttat |
18072820 |
T |
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| Q |
615 |
acataagagtatcaagatgaactaaaaagg |
644 |
Q |
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| T |
18072821 |
tcataagagtatcaagatgaactaaaaagg |
18072850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 18072385 - 18072452
Alignment:
| Q |
117 |
caatatataaa-ccagattcaccacaaattcatttccatacttagcacgcaagactatactccattga |
183 |
Q |
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| T |
18072385 |
caatatataaaaccagattcaccacaaattcatttccatacttagcatgcaagactagactccattga |
18072452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 581 - 644
Target Start/End: Original strand, 18092535 - 18092598
Alignment:
| Q |
581 |
aatacttttaagtagtctagagacattgtcttatacataagagtatcaagatgaactaaaaagg |
644 |
Q |
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| T |
18092535 |
aatacttttaagtagtctggagacactgtcttattcataagagtatcaagatgaactaaaaagg |
18092598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27423045 - 27423084
Alignment:
| Q |
1 |
aaagaaaggtctccctccaacagaaatctaccaacccatt |
40 |
Q |
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| T |
27423045 |
aaagaaaggtctccctccaacagaaatctaccaacccatt |
27423084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 639 - 668
Target Start/End: Original strand, 27423317 - 27423346
Alignment:
| Q |
639 |
aaaaggtcatagagtttatatagaacaaag |
668 |
Q |
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| T |
27423317 |
aaaaggtcatagagtttatatagaacaaag |
27423346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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