View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_low_11 (Length: 388)
Name: NF5980_low_11
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 3 - 372
Target Start/End: Original strand, 42959714 - 42960095
Alignment:
| Q |
3 |
tgacaaacataaatatattattaggacgttaaaagtaagcattattatttatttatattcttaactaatgacataaacacttacatatatgtgtttgaaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42959714 |
tgacaaacataaatatattattaggacgttaaaagtaagcattattatttatttatattcttaactaatgacataaacacttacatatatgtgtttgaaa |
42959813 |
T |
|
| Q |
103 |
gggcttatcaaaatatattataacatgtttataaattgttttcagcttatttcgttaaactg------------agttatcagtaagccctatacatacc |
190 |
Q |
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| T |
42959814 |
gggcttatcaaaatatattataacatgtttataaactgttttcagcttatttcgttaaactgttcatgaaacggagttatcagtaagccctatacatacc |
42959913 |
T |
|
| Q |
191 |
tgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42959914 |
tgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatg |
42960013 |
T |
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| Q |
291 |
atccgaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttct |
372 |
Q |
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| T |
42960014 |
atccgaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttct |
42960095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 357
Target Start/End: Complemental strand, 5504827 - 5504655
Alignment:
| Q |
185 |
catacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaac |
284 |
Q |
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| T |
5504827 |
cataccttcccatcatcatcacagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatcgacgactcggagtctgtcaacgtcaagaac |
5504728 |
T |
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| Q |
285 |
cttatgatccgaatcgataaccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtct |
357 |
Q |
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| T |
5504727 |
cttataatcagggctaactacctttcccacatgacatccaccatggtaatgccaaattgtgatgacagtgtct |
5504655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 11707142 - 11707094
Alignment:
| Q |
106 |
cttatcaaaatatattataacatgtttataaattgttttcagcttattt |
154 |
Q |
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| T |
11707142 |
cttatcaaaatagattatgacatgtttataagttgttttcagcttattt |
11707094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 3094314 - 3094265
Alignment:
| Q |
322 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
371 |
Q |
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| T |
3094314 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
3094265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 35608160 - 35608112
Alignment:
| Q |
178 |
ccctatacatacctgcccatcatcatgacagtagcttgaggatttgttc |
226 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| ||| |||| |
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| T |
35608160 |
ccctgtacatgcctgcccatcatcatgacagtagcttgagaattggttc |
35608112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 3085468 - 3085419
Alignment:
| Q |
322 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
371 |
Q |
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| T |
3085468 |
ccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttc |
3085419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 35064923 - 35064893
Alignment:
| Q |
125 |
acatgtttataaattgttttcagcttatttc |
155 |
Q |
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| T |
35064923 |
acatgtttataaattgttttcagcttatttc |
35064893 |
T |
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