View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_low_13 (Length: 335)
Name: NF5980_low_13
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 25947001 - 25946677
Alignment:
| Q |
1 |
atagaccttttgggttagagagtcgataattatgctgacattgccaaacgcatatatttcatgaccgttgtgcattctaccagatttaggtttgaacagt |
100 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25947001 |
atagaccttttggtttagagagtcaataattatgctgacattgccaaacgtatatatttcatgaccgttgtgcattctaccagatttaggtttgaacagt |
25946902 |
T |
|
| Q |
101 |
aaaccatgatcctgagtataggcttcaataagttctttcacgctgatttcattcacaccatatgcattgacagcaccacccaagcttgcagtagcctgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25946901 |
aaaccatgatcctgagtataggcttcaataagttctttcacgctgatttcattcacaccatatgcattgacagcaccacccaagcttgcagtagcctgtt |
25946802 |
T |
|
| Q |
201 |
gttgagaagaggctgctgctttttgctgagtctcaaatttcctctgctcacttgccctaatatagcttatgttctccttcaaacaaggttgcaccacctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25946801 |
gttgagaagaggctgctgctttttgctgagtctcaaatttcctctgctcacttgccctaatatagcttatgttctccttcaaacaaggttgcaccacctc |
25946702 |
T |
|
| Q |
301 |
catacattcaacagcctggttcatc |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
25946701 |
catacattcaacagcctggttcatc |
25946677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 2663217 - 2662899
Alignment:
| Q |
1 |
atagaccttttgggttagagagtcgataattatgctgacattgccaaacgcatatatttcatgaccgttgtgcattctaccagatttaggtttgaacagt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2663217 |
atagaccttttgatttagagagtcgattattatgctgacattgccaaacccatatatttgatgaccgttgtgcgttctaccagatttaggtttgaacagt |
2663118 |
T |
|
| Q |
101 |
aaaccatgatcctgagtataggcttcaataagttctttcacgctgatttcattcacaccatatgcattgacagcaccacccaagcttgcagtagcctgtt |
200 |
Q |
| |
|
||||||| |||| ||| ||| || |||||||| ||||||||||| |||||||||||||||| || | ||||| ||| |||||||| ||| |||| |
|
|
| T |
2663117 |
aaaccattatcccgagcataagcctcaataagatctttcacgctcatttcattcacaccatctg------cgccaccagccatgcttgcagcagcttgtt |
2663024 |
T |
|
| Q |
201 |
gttgagaagaggctgctgctttttgctgagtctcaaatttcctctgctcacttgccctaatatagcttatgttctccttcaaacaaggttgcaccacctc |
300 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||||| ||||||||| ||||| |
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|
| T |
2663023 |
gttgagcagaggctgctgctttctgctgagtctcaaatttcctttgctcacttaccctgatatagcttatcttctccttcaaaccaggttgcacaacctc |
2662924 |
T |
|
| Q |
301 |
catacattcaacagcctggttcatc |
325 |
Q |
| |
|
||||| |||||| |||||||||||| |
|
|
| T |
2662923 |
cataccttcaacggcctggttcatc |
2662899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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