View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5980_low_17 (Length: 320)

Name: NF5980_low_17
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5980_low_17
NF5980_low_17
[»] chr7 (10 HSPs)
chr7 (18-302)||(25672148-25672435)
chr7 (18-106)||(18503429-18503517)
chr7 (18-70)||(32856902-32856954)
chr7 (19-106)||(7401336-7401423)
chr7 (18-119)||(25833588-25833689)
chr7 (18-119)||(31769448-31769549)
chr7 (22-119)||(35835635-35835732)
chr7 (18-106)||(15106640-15106728)
chr7 (18-106)||(27633964-27634052)
chr7 (23-87)||(41535724-41535787)
[»] chr1 (9 HSPs)
chr1 (18-106)||(5190730-5190818)
chr1 (25-97)||(7078218-7078290)
chr1 (18-106)||(11215034-11215122)
chr1 (18-104)||(23233984-23234070)
chr1 (17-98)||(27579431-27579512)
chr1 (17-74)||(43830856-43830912)
chr1 (18-106)||(6702609-6702697)
chr1 (18-106)||(18467147-18467235)
chr1 (226-282)||(52907358-52907414)
[»] chr3 (10 HSPs)
chr3 (18-70)||(39966059-39966111)
chr3 (44-106)||(44626094-44626156)
chr3 (18-119)||(2522959-2523060)
chr3 (18-98)||(40910137-40910217)
chr3 (19-74)||(6062797-6062852)
chr3 (39-106)||(32023468-32023535)
chr3 (18-106)||(22501880-22501968)
chr3 (18-98)||(34898724-34898804)
chr3 (22-106)||(42920596-42920680)
chr3 (18-98)||(45198756-45198836)
[»] chr8 (10 HSPs)
chr8 (18-119)||(16449158-16449259)
chr8 (18-106)||(34266045-34266133)
chr8 (18-105)||(9813918-9814005)
chr8 (52-121)||(3912098-3912167)
chr8 (18-119)||(38344082-38344183)
chr8 (18-82)||(13105124-13105188)
chr8 (34-106)||(37103323-37103395)
chr8 (18-97)||(39362298-39362378)
chr8 (18-98)||(41458328-41458407)
chr8 (14-106)||(44673597-44673689)
[»] chr4 (16 HSPs)
chr4 (18-103)||(45303936-45304020)
chr4 (18-103)||(47929278-47929363)
chr4 (18-106)||(4590279-4590367)
chr4 (19-106)||(45126166-45126253)
chr4 (23-82)||(55381326-55381385)
chr4 (44-119)||(55521399-55521474)
chr4 (44-106)||(42381062-42381124)
chr4 (44-106)||(44224436-44224498)
chr4 (18-96)||(50512393-50512470)
chr4 (18-119)||(5801988-5802089)
chr4 (18-119)||(25235733-25235834)
chr4 (18-119)||(39023208-39023309)
chr4 (18-119)||(48569112-48569213)
chr4 (52-104)||(40486508-40486559)
chr4 (18-98)||(41137877-41137957)
chr4 (18-82)||(46903364-46903427)
[»] chr2 (8 HSPs)
chr2 (18-119)||(31223653-31223754)
chr2 (22-74)||(27497509-27497561)
chr2 (18-106)||(41566795-41566883)
chr2 (17-85)||(45119677-45119745)
chr2 (217-268)||(30006647-30006698)
chr2 (52-106)||(18862319-18862373)
chr2 (225-282)||(13250311-13250368)
chr2 (14-106)||(1232221-1232313)
[»] chr6 (10 HSPs)
chr6 (18-106)||(3795723-3795811)
chr6 (18-81)||(3709892-3709955)
chr6 (18-81)||(13656299-13656362)
chr6 (22-68)||(9031800-9031846)
chr6 (17-70)||(2426096-2426149)
chr6 (19-72)||(5694948-5695001)
chr6 (18-98)||(3294797-3294877)
chr6 (23-98)||(6338653-6338726)
chr6 (18-106)||(11301400-11301488)
chr6 (18-106)||(29284299-29284387)
[»] chr5 (13 HSPs)
chr5 (18-106)||(17064808-17064895)
chr5 (52-118)||(38696757-38696822)
chr5 (40-81)||(5272165-5272206)
chr5 (18-103)||(8241083-8241168)
chr5 (18-119)||(8478829-8478930)
chr5 (18-119)||(15241429-15241530)
chr5 (18-119)||(35241429-35241529)
chr5 (18-98)||(38097305-38097386)
chr5 (20-60)||(5598770-5598810)
chr5 (22-106)||(11786009-11786093)
chr5 (59-115)||(11954194-11954250)
chr5 (19-119)||(32423599-32423699)
chr5 (22-106)||(41319400-41319484)
[»] scaffold0063 (1 HSPs)
scaffold0063 (18-119)||(56356-56457)
[»] scaffold0246 (1 HSPs)
scaffold0246 (52-104)||(24447-24498)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 25672435 - 25672148
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagtttta---gccactagtctacttgccgaaata 114  Q
    ||||||||||  || ||||| ||||  |||||||||||| | |||||||||||||||||||||||||||| ||   |||||||||||||||||| |||||    
T  25672435 catattatatataaaggttggagttcaaacctcagacaccctacttcttcacatttataatgtgtaagttctactagccactagtctacttgcccaaata 25672336  T
Q  115 aaaaatgtcaatcacaatccataaatggtaaaaacgtcgaaattgttagactgaatgcaatgtctatactccgaatcgttcactcaagtataagtttgat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  25672335 aaaaatgtcaatcacaatccataaatggtaaaaacgtcgaaattgttagacttaatgcaatgtctatactccgactcgttcactcaagtataagtttgat 25672236  T
Q  215 agttgttgaggagtctcacgtcgaataaaatatggtttgaacttgtgtttataaatggagacaatccttgtctcgtaagtcagttttg 302  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||||||||||    
T  25672235 agttgttgaggagtctcatgtcgaataaaatatggtttgaacttgtgtttacaagtggagacaatacttgtctcataagtcagttttg 25672148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 18503517 - 18503429
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| ||| ||| ||| ||||| ||||||| |||||||| |||||||| ||||||| || |||| ||||||| |||||||    
T  18503517 catattatatgcaggggctgaggttcgaaccccagacaccccacttctccacatttaaaatgtgtgagctttaaccactaggctacttg 18503429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 32856954 - 32856902
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcaca 70  Q
    ||||||||||||| ||| ||||||| ||||| |||||||||||||||| ||||    
T  32856954 catattatatgcaggggctgaagttcgaaccccagacactccacttctccaca 32856902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 7401423 - 7401336
Alignment:
Q  19 atattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    |||||||||||| |  |||  ||||||||||| |||||||||||||| |||| ||| | ||||| || | |||||||||| |||||||    
T  7401423 atattatatgcaggaattggggtttgaacctcggacactccacttctccacaattaaattgtgtgagctctagccactagactacttg 7401336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 25833588 - 25833689
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| ||| ||  ||| ||||| |||| ||||||||||| |||| ||  | |||||||| | |||||||||| ||||||| | ||| ||||    
T  25833588 catattatatgcaggggctggggttcgaaccccagatactccacttctccacaatttaattgtgtaagctctagccactaggctacttgacaaaaaaaaa 25833687  T
Q  118 aa 119  Q
    ||    
T  25833688 aa 25833689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 31769549 - 31769448
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| | || |  ||| ||||| ||||||||| |||||| |||| ||| | ||||| || |||||||||||| ||||||| | ||| ||||    
T  31769549 catattatatgcaggagtcggggttcgaaccccagacactctacttctccacaattaaattgtgtgagctttagccactaggctacttgaccaaaaaaaa 31769450  T
Q  118 aa 119  Q
    ||    
T  31769449 aa 31769448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 35835732 - 35835635
Alignment:
Q  22 ttatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaaaa 119  Q
    |||||||||||||  |  ||| |||||||||||||||||||||| |||| ||| | ||||| || |  ||||||||| ||||||| | ||| ||||||    
T  35835732 ttatatgcaagggccggggttcgaacctcagacactccacttctccacaattaaattgtgtgagctccagccactaggctacttgacaaaaaaaaaaa 35835635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 15106728 - 15106640
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| | || |  ||| ||||| |||||||||||||||| |||| ||| | ||||| || |||||||| ||| |||||||    
T  15106728 catattatatgcaggagtcggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctttagccagtagactacttg 15106640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 27633964 - 27634052
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| |||| |  ||| ||||| |||| ||||||| |||||||| ||| | |||||||| | ||||||| || |||||||    
T  27633964 catattatatgcaggggtcggggttcgaaccacagatactccacgtcttcacaattaaattgtgtaagctctagccacgagactacttg 27634052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 41535724 - 41535787
Alignment:
Q  23 tatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagtt 87  Q
    ||||||||||||| || ||| ||||| | || |||||||||||||||||||| ||||||| ||||    
T  41535724 tatatgcaagggtcgaggttcgaacc-cggatactccacttcttcacatttaaaatgtgtgagtt 41535787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 5190818 - 5190730
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| |||| || ||| ||||| | ||||| |||||||| |||| ||||| |||||||||| |||||||||| |||||||    
T  5190818 catattatatgcaggggtcgaggttcgaaccccggacaccccacttctccacaattatattgtgtaagttctagccactaggctacttg 5190730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 7078218 - 7078290
Alignment:
Q  25 tatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccacta 97  Q
    |||||| |||||||||||| ||| |||| || ||||||||| |||||||| ||||||| || |||||||||||    
T  7078218 tatgcaggggttgaagttttaacatcagtcattccacttctccacatttaaaatgtgtgagctttagccacta 7078290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 11215034 - 11215122
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| ||| ||| ||| ||||| |||||||||||||||| |||| ||  | ||||| || | |||||||||| |||||||    
T  11215034 catattatatgcaggggctgaggttcgaaccccagacactccacttctccacaatttaattgtgtgagctctagccactaggctacttg 11215122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 23233984 - 23234070
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctact 104  Q
    ||||||||||||| |||| |  ||| ||||| ||||||| | |||||| |||||||||||||||| || | ||||| |||| |||||    
T  23233984 catattatatgcaggggtcggggttcgaaccccagacaccctacttctccacatttataatgtgtgagctctagccgctagactact 23234070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 27579512 - 27579431
Alignment:
Q  17 acatattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactag 98  Q
    |||||||||||||| |||  |||||| |||||  |||||| ||| |||| |||||||| ||||||| || | ||||||||||    
T  27579512 acatattatatgcaggggccgaagttcgaaccctagacaccccatttctccacatttaaaatgtgtgagctctagccactag 27579431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 43830912 - 43830856
Alignment:
Q  17 acatattatatgcaagggttgaagtttgaacctcagacactccacttcttcacattta 74  Q
    |||||||||||||  ||||||| ||| ||||||| || ||||||||||||||||||||    
T  43830912 acatattatatgcg-gggttgatgttcgaacctcggatactccacttcttcacattta 43830856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 6702609 - 6702697
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| | || |  ||| ||||| ||||||||||||||||||||| ||| | ||||| || | |||||| ||| |||||||    
T  6702609 catattatatgcaggagtcggggttcgaaccccagacactccacttcttcacaattaaattgtgtgagctctagccattaggctacttg 6702697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 18467235 - 18467147
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| ||| ||  ||| ||||| |||||||||||||||| |||| ||  | ||||| || | |||||||||| |||||||    
T  18467235 catattatatgcaggggctggggttcgaaccccagacactccacttctccacaatttaattgtgtgagctctagccactaggctacttg 18467147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 52907358 - 52907414
Alignment:
Q  226 agtctcacgtcgaataaaatatggtttgaacttgtgtttataaatggagacaatcct 282  Q
    |||| ||| ||| |||||||||||||||||| ||||||||||| ||| | |||||||    
T  52907358 agtcccacatcggataaaatatggtttgaacatgtgtttataagtgggggcaatcct 52907414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 39966111 - 39966059
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcaca 70  Q
    ||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||    
T  39966111 catattatatgcaggggttgaggttcgaacctcagacactccacttctccaca 39966059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 44626094 - 44626156
Alignment:
Q  44 gaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    |||||||||||||||||||||| |||| ||||| ||||| || | |||||||||| |||||||    
T  44626094 gaacctcagacactccacttctccacaattatattgtgtgagctctagccactaggctacttg 44626156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 2522959 - 2523060
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||||| | ||  ||||||||| | |||||||||||||| |||| ||| | ||||| || | |||||||||| ||||||| | ||| ||||    
T  2522959 catattatatgcaagagctggggtttgaaccccggacactccacttctccacaattaaattgtgtgagctctagccactaggctacttgaccaaaaaaaa 2523058  T
Q  118 aa 119  Q
    ||    
T  2523059 aa 2523060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 40910217 - 40910137
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactag 98  Q
    ||||||||||||| ||| ||| ||  ||||| |||||||||||||||| |||| ||||| ||||| || | ||||||||||    
T  40910217 catattatatgcaggggctgaggtccgaaccccagacactccacttctccacaattatattgtgtgagctctagccactag 40910137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 6062852 - 6062797
Alignment:
Q  19 atattatatgcaagggttgaagtttgaacctcagacactccacttcttcacattta 74  Q
    |||||||||||| |||||||  || ||||| |||||||||||||||| ||||||||    
T  6062852 atattatatgcaggggttgagattcgaaccccagacactccacttctccacattta 6062797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 32023468 - 32023535
Alignment:
Q  39 agtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    |||||||||| || ||||  || ||||||||||||| ||||||| ||||| ||||||||| |||||||    
T  32023468 agtttgaaccccatacacctcatttcttcacatttaaaatgtgtgagtttcagccactagactacttg 32023535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 22501968 - 22501880
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| ||| ||  ||| ||||| |||||||||||||||| |||| ||  | ||||| || | |||||||||| |||||||    
T  22501968 catattatatgcaggggctggggttcgaaccccagacactccacttctccacaatttaattgtgtgagctctagccactaggctacttg 22501880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 34898804 - 34898724
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactag 98  Q
    ||||||||||||| ||| ||| ||| ||||| ||||||| |||||||| |||| ||| | ||||| || | ||||||||||    
T  34898804 catattatatgcaggggctgaggttcgaaccccagacaccccacttctccacaattaaattgtgtgagctctagccactag 34898724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 42920680 - 42920596
Alignment:
Q  22 ttatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||| ||||||  ||| ||||| |||||||||||||||| |||| ||| | ||||| || | | |||||||| |||||||    
T  42920680 ttatatgcaggggttggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctctggccactaggctacttg 42920596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 45198756 - 45198836
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactag 98  Q
    ||||||||||| | ||| ||| ||| ||||||||||||||| |||||| |||| ||| | ||||| || | ||||||||||    
T  45198756 catattatatgtaggggctgaggttcgaacctcagacactctacttctccacaattaaattgtgtgagctctagccactag 45198836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 16449158 - 16449259
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| ||||||  ||| ||||| |||||||||||||||| |||| ||  | ||||| || | |||||||||| ||||||| | ||| ||||    
T  16449158 catattatatgcaggggttggggttcgaaccccagacactccacttctccacaatttaattgtgtgagctctagccactaggctacttgacaaaaaaaaa 16449257  T
Q  118 aa 119  Q
    ||    
T  16449258 aa 16449259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 34266045 - 34266133
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| | ||||  ||| ||||||| |||||||||||||| |||| ||| | ||||| || | |||||||||| |||||||    
T  34266045 catattatatgcaggagttggggttcgaacctcggacactccacttctccacaattaaattgtgtgagctctagccactaggctacttg 34266133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 9814005 - 9813918
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctactt 105  Q
    |||||||||||||  |  ||| ||| ||||||| ||||||||| ||||| ||||||| ||| |||||| | |||||||||| ||||||    
T  9814005 catattatatgcagagactgaggttcgaacctcggacactccagttctttacatttaaaatatgtaagctctagccactagactactt 9813918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 3912167 - 3912098
Alignment:
Q  52 gacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaaaatg 121  Q
    ||||| |||||||| |||||||||||||||| || | |||||||||| ||||| | | ||| ||||||||    
T  3912167 gacaccccacttctccacatttataatgtgtgagctctagccactaggctactagaccaaaaaaaaaatg 3912098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 38344082 - 38344183
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| | | ||  ||| ||||| |||||||||||||||| |||| ||| | ||||| || | |||||||||| ||||||| | ||| ||||    
T  38344082 catattatatgcaggagctggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctctagccactagactacttgaccaaaaaaaa 38344181  T
Q  118 aa 119  Q
    ||    
T  38344182 aa 38344183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 13105124 - 13105188
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgt 82  Q
    |||| ||||||||||||  |  ||| ||||||||||||| |||||||| |||||||| |||||||    
T  13105124 cataatatatgcaagggccggggttcgaacctcagacaccccacttctccacatttaaaatgtgt 13105188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 37103323 - 37103395
Alignment:
Q  34 gttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    |||| |||||||| |||||| ||  |||||||||||||||| ||||||||| || ||  |||||| |||||||    
T  37103323 gttggagtttgaatctcagatacctcacttcttcacatttaaaatgtgtaaattctaatcactaggctacttg 37103395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 39362298 - 39362378
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatt-tataatgtgtaagttttagccacta 97  Q
    |||||||||||||  ||||| |||| ||||| ||||||| |||||||| ||||||  | ||||||| |||| |||||||||    
T  39362298 catattatatgcagaggttggagttcgaaccccagacaccccacttctccacattaaaaaatgtgtgagttctagccacta 39362378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 41458328 - 41458407
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactag 98  Q
    ||||||||||||| ||| ||   || ||||||| |||||||||||||| |||||||| ||||||| || || |||||||||    
T  41458328 catattatatgcaggggctgggtttcgaacctcggacactccacttctccacattta-aatgtgtgagcttcagccactag 41458407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 44673689 - 44673597
Alignment:
Q  14 atcacatattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||| ||||||||| |||| |  ||| ||||| |||||||||||||| | |||| ||| | ||||| || | |||||||||| |||||||    
T  44673689 atcacattttatatgcaggggtcggggttcgaaccccagacactccacttttccacaattaaattgtgtgagctctagccactagactacttg 44673597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 45304020 - 45303936
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctac 103  Q
    |||| |||||||||||||||||||| ||||| | ||||| |||||||| |||||| | ||||||| ||||  ||||||||| ||||    
T  45304020 cataatatatgcaagggttgaagttcgaacc-cggacaccccacttctccacattaaaaatgtgtgagttccagccactaggctac 45303936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 47929278 - 47929363
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctac 103  Q
    ||||||||||||| |||| || ||| ||||||| || || |||||||| |||||||| ||||||| || | |||||||||| ||||    
T  47929278 catattatatgcaggggtcgaggttcgaacctcggaaaccccacttctccacatttaaaatgtgtgagctctagccactaggctac 47929363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 4590279 - 4590367
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    |||||||||| || ||| ||| ||| ||||| |||||||||||||||| |||| ||  | ||||| || |||||||||||| |||||||    
T  4590279 catattatatacaggggctgaggttcgaaccccagacactccacttctccacaatttaattgtgtgagctttagccactaggctacttg 4590367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 45126166 - 45126253
Alignment:
Q  19 atattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    |||||||||||| | | ||| ||| ||||| |||||||||||||||| |||| ||  | ||||| || |||||||||||| |||||||    
T  45126166 atattatatgcaggagctgaggttcgaaccccagacactccacttctccacaatttaattgtgtgagctttagccactaggctacttg 45126253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 55381385 - 55381326
Alignment:
Q  23 tatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgt 82  Q
    |||||| | ||||||  ||||||||| ||||||| |||| ||||||||||||||||||||    
T  55381385 tatatgtaggggttggggtttgaaccccagacaccccacctcttcacatttataatgtgt 55381326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 55521474 - 55521399
Alignment:
Q  44 gaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaaaa 119  Q
    ||||| || |||||||||||||||||||||| |||||||||  || ||||||||  ||||||| | ||| ||||||    
T  55521474 gaaccccaaacactccacttcttcacatttaaaatgtgtaaacttcagccactaaactacttgacaaaaaaaaaaa 55521399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 42381124 - 42381062
Alignment:
Q  44 gaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| |||||||| |||| ||| | ||||| || |||||||||||| |||||||    
T  42381124 gaacctcagacaccccacttctccacaattaaattgtgtgagctttagccactaggctacttg 42381062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 44224498 - 44224436
Alignment:
Q  44 gaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| |||||||| |||| ||| | ||||  ||||||||||||||| |||||||    
T  44224498 gaacctcagacaccccacttctccacaattaaattgtgggagttttagccactaggctacttg 44224436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 50512393 - 50512470
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccact 96  Q
    ||||||||||||| ||||||| ||| ||||||| |||||   |||||| |||||||| ||||||| || ||||||||||    
T  50512393 catattatatgcaggggttgaggttcgaacctctgacaccttacttctccacattta-aatgtgtgagctttagccact 50512470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 5801988 - 5802089
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| ||| ||  ||| |||||||| ||||||||||||| |||| || || ||||| || |||| ||||||  ||||||| | ||| ||||    
T  5801988 catattatatgcaggggctggggttcgaacctcacacactccacttctccacaattttattgtgtgagctttaaccactaaactacttgaccaaaaaaaa 5802087  T
Q  118 aa 119  Q
    ||    
T  5802088 aa 5802089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 25235834 - 25235733
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| ||| ||  ||| ||||| |||||||||||||||| |||| ||  | ||||| |||| |||| ||||| ||||||| | ||| ||||    
T  25235834 catattatatgcaggggctggggttcgaaccccagacactccacttctccacaatttaattgtgtgagttctagctactaggctacttgaccaaaaaaaa 25235735  T
Q  118 aa 119  Q
    ||    
T  25235734 aa 25235733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 39023208 - 39023309
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| |||| |  ||| |||||   |||||||||||||| |||| ||  | |||||||||| |||||||||| ||||||| | ||| ||||    
T  39023208 catattatatgcaggggtcggggttcgaaccctggacactccacttctccacaatttaattgtgtaagttctagccactaggctacttgacaaaaaaaaa 39023307  T
Q  118 aa 119  Q
    ||    
T  39023308 aa 39023309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 48569213 - 48569112
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| ||| ||  ||| ||||| |||||||||||||||| |||| ||  | ||||| || | |||||||||| ||||||| | ||| ||||    
T  48569213 catattatatgcaggggctggggttcgaaccccagacactccacttctccacaatttaattgtgtgagctctagccactaggctacttgacaaaaaaaaa 48569114  T
Q  118 aa 119  Q
    ||    
T  48569113 aa 48569112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 40486508 - 40486559
Alignment:
Q  52 gacactccacttcttcacatttataatgtgtaagttttagccactagtctact 104  Q
    ||||||||||||||||||||||| ||||||| || | |||||||||| |||||    
T  40486508 gacactccacttcttcacattta-aatgtgtgagctctagccactaggctact 40486559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 41137957 - 41137877
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactag 98  Q
    |||| |||||||| ||||||  ||| ||||| ||||||| ||||||||||| ||||| ||||| | || | ||||||||||    
T  41137957 cataatatatgcaggggttggggttcgaaccacagacaccccacttcttcatatttaaaatgtttgagctctagccactag 41137877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 46903364 - 46903427
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgt 82  Q
    ||||||||||||| ||||||  ||||||||| | ||||| |||||||| | ||||||||||||||    
T  46903364 catattatatgcaggggttgg-gtttgaaccccggacaccccacttctccgcatttataatgtgt 46903427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 31223653 - 31223754
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| ||| ||  ||||||||| |||||||||||||||| |||| ||  | ||||| || |||||| ||||| ||||||| | ||| ||||    
T  31223653 catattatatgcaggggctggggtttgaaccccagacactccacttctccacaatttaattgtgtgagctttagctactaggctacttgaccaaaaaaaa 31223752  T
Q  118 aa 119  Q
    ||    
T  31223753 aa 31223754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 27497561 - 27497509
Alignment:
Q  22 ttatatgcaagggttgaagtttgaacctcagacactccacttcttcacattta 74  Q
    ||||||||||||| || ||||||||||||| |||| |||||||| ||||||||    
T  27497561 ttatatgcaagggctggagtttgaacctcaaacaccccacttctccacattta 27497509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 41566795 - 41566883
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| |||||| |||| ||| | |||||||||||||||| |||| ||  | ||||| || | |||||||||| |||||||    
T  41566795 catattatatgcaggggttggagttcgaatcccagacactccacttctccacaatttaattgtgtgagctctagccactaggctacttg 41566883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 45119745 - 45119677
Alignment:
Q  17 acatattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaag 85  Q
    |||||||||||||| |||| | |||| ||||||| ||||||||| |||| || ||||| ||||||||||    
T  45119745 acatattatatgcaggggtcggagttcgaacctcggacactccatttctccatatttaaaatgtgtaag 45119677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 30006698 - 30006647
Alignment:
Q  217 ttgttgaggagtctcacgtcgaataaaatatggtttgaacttgtgtttataa 268  Q
    ||||||| ||||||||||||||| |||||||||  ||||| |||||||||||    
T  30006698 ttgttgaagagtctcacgtcgaacaaaatatggcatgaacatgtgtttataa 30006647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 18862319 - 18862373
Alignment:
Q  52 gacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    |||||||||||||| |||||||| ||||||| || | |||||||||| |||||||    
T  18862319 gacactccacttctccacatttaaaatgtgtgagctctagccactaggctacttg 18862373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 13250368 - 13250311
Alignment:
Q  225 gagtctcacgtcgaataaaatatggtttgaacttgtgtttataaatggagacaatcct 282  Q
    ||||||||| ||  |||||| || |||||||| |||||||||||||| ||||||||||    
T  13250368 gagtctcacatcagataaaagattgtttgaacatgtgtttataaatgcagacaatcct 13250311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 1232221 - 1232313
Alignment:
Q  14 atcacatattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||| ||||||||| ||||||| ||| ||| | | |||||||||||||| || | ||| | |||||||||| |||| | ||| |||||||    
T  1232221 atcacattttatatgcaggggttgaggttcgaatcccggacactccacttctccataattaaattgtgtaagttctagcaattagactacttg 1232313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 3795811 - 3795723
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| ||| ||  ||| |||||||||||||||||||||| |||| ||  | ||||| || | |||||||||| |||||||    
T  3795811 catattatatgcaggggctggggttcgaacctcagacactccacttctccacaatttaattgtgtgagctctagccactaggctacttg 3795723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 3709892 - 3709955
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtg 81  Q
    ||||||||||||||||| ||  ||| ||||| ||||||| |||||||| |||||||| ||||||    
T  3709892 catattatatgcaaggggtggggttcgaaccccagacaccccacttctccacatttaaaatgtg 3709955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 13656299 - 13656362
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtg 81  Q
    |||| |||||||| |||| || ||||||||| ||||||| ||||||||||||||| | ||||||    
T  13656299 cataatatatgcaggggtcgatgtttgaaccccagacaccccacttcttcacattaaaaatgtg 13656362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 9031800 - 9031846
Alignment:
Q  22 ttatatgcaagggttgaagtttgaacctcagacactccacttcttca 68  Q
    ||||||||| || |||||||||||||||||||||| |||||| ||||    
T  9031800 ttatatgcagggcttgaagtttgaacctcagacaccccacttattca 9031846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 2426096 - 2426149
Alignment:
Q  17 acatattatatgcaagggttgaagtttgaacctcagacactccacttcttcaca 70  Q
    |||||||||||||||||||||  ||| ||||| | |||||||||||||| ||||    
T  2426096 acatattatatgcaagggttggggttcgaaccccggacactccacttctccaca 2426149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 5694948 - 5695001
Alignment:
Q  19 atattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatt 72  Q
    |||||||||||| |||| | |||||||||||| ||||| |||||||| ||||||    
T  5694948 atattatatgcaggggtaggagtttgaacctcggacaccccacttctccacatt 5695001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 3294797 - 3294877
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactag 98  Q
    ||||||||||||| |||| |  ||| ||||| | ||||| ||||||||||||| ||| | ||||| |||| ||||||||||    
T  3294797 catattatatgcaggggtcggggttcgaaccccggacaccccacttcttcacaattaaattgtgtgagttctagccactag 3294877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 6338726 - 6338653
Alignment:
Q  23 tatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactag 98  Q
    |||||| ||||||||||||||||||| |  |||||| ||| || |||||||| ||||||  |||| ||||||||||    
T  6338726 tatatgtaagggttgaagtttgaaccccgtacactctactactccacatttaaaatgtg--agttctagccactag 6338653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 11301400 - 11301488
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| | ||||  ||| ||| ||| ||||||||||||||||||| ||| | ||||| || | |||| ||||| |||||||    
T  11301400 catattatatgcaggagttggggttcgaatctcggacactccacttcttcacaattaaattgtgtgagctctagcaactagactacttg 11301488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 29284299 - 29284387
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||| | |||  | |||| ||||| | ||||| |||||||| |||| ||| | |||||||||| |||||||||| |||||||    
T  29284299 catattatatgaaggggccggagttcgaaccccggacaccccacttctccacaattaaattgtgtaagttctagccactaggctacttg 29284387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 17064895 - 17064808
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||||||| |||  || ||||||||| | ||||| |||||||| |||||||| | ||||| |||| |||||||||| |||||||    
T  17064895 catattatatgcaggggccgacgtttgaaccccggacaccccacttctccacattta-attgtgtgagttctagccactaggctacttg 17064808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 38696757 - 38696822
Alignment:
Q  52 gacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaaa 118  Q
    ||||||||||||||||||||||| ||||||| || | || ||||||| ||||||| | |||||||||    
T  38696757 gacactccacttcttcacattta-aatgtgtgagctctatccactagactacttgaccaaataaaaa 38696822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 5272165 - 5272206
Alignment:
Q  40 gtttgaacctcagacactccacttcttcacatttataatgtg 81  Q
    |||||||||| |||||| ||||||||||||||||| ||||||    
T  5272165 gtttgaaccttagacaccccacttcttcacatttaaaatgtg 5272206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 8241083 - 8241168
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctac 103  Q
    |||||||||||||||||| |  ||| ||||| | ||||| |||||||| |||||||| ||||||| || | || ||||||| ||||    
T  8241083 catattatatgcaagggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctctaaccactaggctac 8241168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 8478930 - 8478829
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| ||| ||  ||| ||||| || |||||||||||||||||| ||  | ||||| || | |||||||||| ||||||| | ||| ||||    
T  8478930 catattatatgcaggggctgtggttcgaaccccatacactccacttcttcacaatttaattgtgtgagctctagccactagactacttgacaaaaaaaaa 8478831  T
Q  118 aa 119  Q
    ||    
T  8478830 aa 8478829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 15241429 - 15241530
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| |||| |  ||| ||||||| ||||| |||||||| |||| ||| | ||||| || | |||||||||| ||||||| | ||| ||||    
T  15241429 catattatatgcaggggtcggggttcgaacctcggacaccccacttctccacaattaaattgtgtgagctctagccactagactacttgacaaaaaaaaa 15241528  T
Q  118 aa 119  Q
    ||    
T  15241529 aa 15241530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 35241429 - 35241529
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| |||| |  ||| ||||| | |||||||||||||| |||| ||  | ||||| ||||||||||||||| ||||||| | ||| ||||    
T  35241429 catattatatgcaggggtcggggttcgaacc-ctgacactccacttctccacaatttaattgtgtgagttttagccactagactacttgacaaaaaaaaa 35241527  T
Q  118 aa 119  Q
    ||    
T  35241528 aa 35241529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 38097305 - 38097386
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagaca-ctccacttcttcacatttataatgtgtaagttttagccactag 98  Q
    ||||||||||||| ||| ||| ||| |||| ||||||| | |||||||| |||||||| ||||||| || | ||||||||||    
T  38097305 catattatatgcaggggctgaggttcgaacatcagacacccccacttctccacatttaaaatgtgtgagctctagccactag 38097386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 5598810 - 5598770
Alignment:
Q  20 tattatatgcaagggttgaagtttgaacctcagacactcca 60  Q
    ||||||||| | ||||||| |||||||||||||||||||||    
T  5598810 tattatatgtaggggttgaggtttgaacctcagacactcca 5598770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 11786093 - 11786009
Alignment:
Q  22 ttatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||| ||| ||| ||| ||||| || ||||||||||||| |||| ||| | ||||| || | |||||||||| |||||||    
T  11786093 ttatatgcaggggctgaggttcgaaccccacacactccacttctccacaattaaattgtgtgagctctagccactagactacttg 11786009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 11954250 - 11954194
Alignment:
Q  59 cacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataa 115  Q
    ||||||| || |||||||||||||||| |||| ||||||| ||||||| | ||||||    
T  11954250 cacttctccatatttataatgtgtaagctttaaccactaggctacttgacaaaataa 11954194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 32423599 - 32423699
Alignment:
Q  19 atattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaaa 118  Q
    |||||||||||| ||| ||  |||  |||| |||||||||||||||| |||| ||  | ||||| |||| |||||||||| ||||||| | ||| |||||    
T  32423599 atattatatgcaggggctggggttcaaaccccagacactccacttctccacaatttaattgtgtgagttctagccactagactacttgaccaaaaaaaaa 32423698  T
Q  119 a 119  Q
    |    
T  32423699 a 32423699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 41319484 - 41319400
Alignment:
Q  22 ttatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttg 106  Q
    ||||||||| |||| | |||| ||||| | |||||||||||||| |||| ||| | ||||| || | |||||||||| |||||||    
T  41319484 ttatatgcaggggtcggagttcgaaccccggacactccacttctccacaattaaattgtgtgagctctagccactagactacttg 41319400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 56356 - 56457
Alignment:
Q  18 catattatatgcaagggttgaagtttgaacctcagacactccacttcttcacatttataatgtgtaagttttagccactagtctacttgccgaaataaaa 117  Q
    ||||||||||||| |||  |  ||| ||||| |||||||| || |||| |||| ||| | ||||| ||||||||||||||| ||||||| | ||| ||||    
T  56356 catattatatgcaggggccggggttcgaaccccagacacttcatttctccacaattaaattgtgtgagttttagccactagactacttgacaaaaaaaaa 56455  T
Q  118 aa 119  Q
    ||    
T  56456 aa 56457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 24447 - 24498
Alignment:
Q  52 gacactccacttcttcacatttataatgtgtaagttttagccactagtctact 104  Q
    ||||||||||||||||||||||| ||||||| || | |||||||||| |||||    
T  24447 gacactccacttcttcacattta-aatgtgtgagctctagccactaggctact 24498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University