View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_low_19 (Length: 278)
Name: NF5980_low_19
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 16295411 - 16295664
Alignment:
| Q |
8 |
tagcatagggaatgagtgtattaaagacaaagatgatggcttcttcttagttcaaccaattagaaggtctttctcaatggacttagcaatatataaatct |
107 |
Q |
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| T |
16295411 |
tagcatggggaatgagtgtattaaagacaaagatgatggcttc---ttagttcaaccaattagaaggtctttctcaatggacttagcaatatataaatct |
16295507 |
T |
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| Q |
108 |
ttatatcaacctaatttgcatgttcatgaggttagttccattgaagtttgtggtgatagtagtaatagacctaaaagatcattcttttcctttggacatg |
207 |
Q |
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| T |
16295508 |
ttatatcaacctaatttgcatgttcacgaggttagttccattgaagtttgtggtgatagtagtaatagacctaagagatcattcttttcctttggacatg |
16295607 |
T |
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| Q |
208 |
gaagtagatcaagaagtgttgtttgaccaattcatttggacccttgaaagtttcttt |
264 |
Q |
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| T |
16295608 |
gaagtagatcaagaagtgttgtttgaccaattcatttggacccttgaaagtttcttt |
16295664 |
T |
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