View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_low_2 (Length: 651)
Name: NF5980_low_2
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 610; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Complemental strand, 34216691 - 34216054
Alignment:
| Q |
1 |
tctctgttgcaagaacagacactcccttttacaccacttaatgatgtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccac |
100 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216691 |
tctctgttgcaagaacagacactctcttctacaccacttaatgatgtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccac |
34216592 |
T |
|
| Q |
101 |
agggaaggtttcctcactccgctagtcccgagttggaattggtttccgaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34216591 |
agggaaggtttcctcactccgctagtcccgagttggaattggtttccgaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacagga |
34216492 |
T |
|
| Q |
201 |
ttctcggaacgtaagagttcttgggacttctgtcgctgctgttcggctcccctcatcagttgagcacgtcaacgtgcatgagaactctgagtttactgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216491 |
ttctcggaacgtaagagttcttgggacttctgtcgctgccgttcggctcccctcttcagttgagcacgtcaacgtgcatgagaactctgagtttactgtt |
34216392 |
T |
|
| Q |
301 |
tctgcttctgttacggagatgagtccctcgcttgcccaactcagtaaatcacaaacggatgtttccaccaattcgttcaaccttgccttgcaatatgtta |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34216391 |
tctgcttctgttaaggagatgagtccctcgcttgcccaactcagtaaatcacaaacggatgtttccaccaattcgttcaaccttgccttgcaatatgtta |
34216292 |
T |
|
| Q |
401 |
tagatgaaattccaaagggaaggttgcctcagctcactagccccgtgttggatttggttactgcagtagcatacgatgacgtgcattcaaatgtagtgga |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34216291 |
tagatgaaattccaaagggaaggttgcctcagctcactagccccgtgttggatttggttactgcagtagcatacgatgacgtgcattcaaatgtagtgga |
34216192 |
T |
|
| Q |
501 |
gcaaacactttcaggattctcaggacacgagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgtcgtgcatgagaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
34216191 |
gcaaacactttcaggattctcaggacacgagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgacgtgcatgagaa |
34216092 |
T |
|
| Q |
601 |
cgccgagttagctctctccgcttctgttaggtagatga |
638 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34216091 |
tgccgagttagctctctccgcttctgttaggtagatga |
34216054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 338
Target Start/End: Complemental strand, 34216297 - 34216038
Alignment:
| Q |
80 |
atgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttccgaggtagcacacgatgacgtgcattcacaggg |
179 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| ||||| | |||| |||| |||||| |||||| | | |||||| ||||||||||||||||| | | |
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|
| T |
34216297 |
atgttatagatgaaattccaaagggaaggttgcctcagctcactagccccgtgttggatttggttactgcagtagcatacgatgacgtgcattcaaatgt |
34216198 |
T |
|
| Q |
180 |
agtagagaaaatgcca-caggattctcggaacgtaagagttcttgggacttctgtcgctgctgttcggctcccctcatcagttgagcacgtcaacgtgca |
278 |
Q |
| |
|
||| ||| ||| | |||||||||| | || || ||||| | ||||||||| |||||||||| ||| ||| ||| | |||||||| ||||||| |
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| T |
34216197 |
agtggagcaaacactttcaggattctcaggacacgagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgacgtgca |
34216098 |
T |
|
| Q |
279 |
tgagaactctgagtttactgtttctgcttctgttacggagatgagtccctcgcttgccca |
338 |
Q |
| |
|
|||||| | ||||| || | || |||||||||| | |||||||||||||||| ||||| |
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|
| T |
34216097 |
tgagaatgccgagttagctctctccgcttctgttaggtagatgagtccctcgctggccca |
34216038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 529 - 638
Target Start/End: Original strand, 11212583 - 11212687
Alignment:
| Q |
529 |
gagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgtcgtgcatgagaacgccgagttagctctctccgcttctgtt |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| || ||||||||||| ||||||||||||||| |||| |
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| T |
11212583 |
gagcgttctagagacttctgtagctgctgttccgcttatctttttagtagagtgcgttgacgcacatgagaacgc-----tagctctctccgcttatgtt |
11212677 |
T |
|
| Q |
629 |
aggtagatga |
638 |
Q |
| |
|
||| |||||| |
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|
| T |
11212678 |
agggagatga |
11212687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 19552189 - 19552380
Alignment:
| Q |
48 |
ttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttcc |
147 |
Q |
| |
|
|||||||||||| |||||||| | ||||| ||||||||||||||||| || || |||||||| ||||| | |||||||| ||| || ||| || |
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|
| T |
19552189 |
ttctgccaactcgttcagctttgcgttgcaaaatgttacagatgaaatccctcaaggaaggttacctcaggcttctagtcccatgttagagttg---tct |
19552285 |
T |
|
| Q |
148 |
gaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttgggacttctgtcgctgctgt |
242 |
Q |
| |
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|| ||||| ||| |||||||||||||||| ||||| || ||| | |||||| ||||||| |||| ||||||| || ||||| ||||||||| |
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| T |
19552286 |
gaagtagcgcacaatgacgtgcattcacatggagtggaacaaacacaacaggactctcggaccgtacaggttcttgagatttctgccgctgctgt |
19552380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 27457937 - 27457810
Alignment:
| Q |
46 |
gtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggttt |
145 |
Q |
| |
|
||||| |||||||| |||||||| ||||||| ||||||| |||||||| || || |||||||| ||||| ||| |||||| | |||||| || | |
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| T |
27457937 |
gtttccgccaactcgttcagctttgcattgcataatgttatggatgaaatccctcaaggaaggttacctcaggccgttagtcctgtgttggagctg---t |
27457841 |
T |
|
| Q |
146 |
ccgaggtagcacacgatgacgtgcattcaca |
176 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |
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|
| T |
27457840 |
ccgaagtagcgcacgatgacgtgcattcaca |
27457810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 21565079 - 21565119
Alignment:
| Q |
132 |
gttggaattggtttccgaggtagcacacgatgacgtgcatt |
172 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21565079 |
gttggaattggtttccgaggtagcccacgatgacgtgcatt |
21565119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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