View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5980_low_20 (Length: 254)

Name: NF5980_low_20
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5980_low_20
NF5980_low_20
[»] chr2 (17 HSPs)
chr2 (20-240)||(9292322-9292542)
chr2 (35-205)||(9283721-9283891)
chr2 (32-231)||(9357586-9357782)
chr2 (32-213)||(9316449-9316630)
chr2 (32-213)||(9329020-9329201)
chr2 (32-211)||(9321399-9321578)
chr2 (34-205)||(9060665-9060836)
chr2 (24-202)||(10353553-10353731)
chr2 (141-205)||(10336273-10336337)
chr2 (147-205)||(8573142-8573200)
chr2 (35-104)||(10372391-10372460)
chr2 (35-111)||(9275044-9275120)
chr2 (141-203)||(10372301-10372363)
chr2 (136-205)||(7115271-7115340)
chr2 (146-231)||(9274915-9275000)
chr2 (141-198)||(10348227-10348284)
chr2 (32-104)||(10348312-10348384)
[»] chr4 (1 HSPs)
chr4 (24-203)||(26575304-26575483)
[»] chr3 (1 HSPs)
chr3 (32-205)||(37462927-37463100)
[»] scaffold0667 (2 HSPs)
scaffold0667 (141-205)||(4912-4976)
scaffold0667 (32-93)||(5018-5079)
[»] chr8 (2 HSPs)
chr8 (143-205)||(41966362-41966424)
chr8 (35-91)||(41966254-41966310)
[»] chr1 (4 HSPs)
chr1 (143-204)||(29467429-29467489)
chr1 (146-204)||(29452955-29453013)
chr1 (147-204)||(29442970-29443027)
chr1 (143-200)||(29423702-29423759)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 9292542 - 9292322
Alignment:
Q  20 ccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  9292542 ccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatcggattatcccttttctccctcttgctatccctaacattctcgagtctg 9292443  T
Q  120 aaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctaca 219  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292442 aaaacattgatcgcgccggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctaca 9292343  T
Q  220 ttactcttttgatccacaggt 240  Q
    |||||||||||||||||||||    
T  9292342 ttactcttttgatccacaggt 9292322  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 9283721 - 9283891
Alignment:
Q  35 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcg 134  Q
    ||||||||| ||| |||| ||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||    
T  9283721 gaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatccctaacattgtggagtctgaaaacattgaacgcg 9283820  T
Q  135 caggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 205  Q
      ||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  9283821 gcggtgtatgcattcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttgg 9283891  T

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Target: chr2; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 9357782 - 9357586
Alignment:
Q  32 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 131  Q
    ||||||||| || ||| ||||| |||||  | |||||||   ||||||||||| ||||||||| ||||||||||||||||    |||   ||||||||      
T  9357782 aacgaaatctcaatctggaaccataacatccgtaaacatcacattatccctttcctccctcttcctatccctaacattctccgatctttcaacattgacg 9357683  T
Q  132 gcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctacattactcttttga 231  Q
    |||   |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9357682 gcg---gtgtatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggatagccgacctacattactcttttga 9357586  T

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Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 9316630 - 9316449
Alignment:
Q  32 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 131  Q
    |||||||||||| ||| |||||||||||| | ||||||| | ||||||||||| || |||||||||||||||||||||||||| ||||| ||     |||    
T  9316630 aacgaaatcacaatctggaaccctaacacccgtaaacatcgtattatccctttccttcctcttgctatccctaacattcttgaatctgacaaacccaatc 9316531  T
Q  132 gcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccga 213  Q
    |||  ||| ||||||||||||||||||||| |||||||| ||| || |||||||||||||||||||| |||||||| |||||    
T  9316530 gcggcggtatatgcgttcacggcttcggttttgatccatcaacaggtgattacaaactcctcagaatttcttggatggccga 9316449  T

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Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 9329201 - 9329020
Alignment:
Q  32 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 131  Q
    |||||||||||| ||| |||||||||||| | ||||||| | ||||||||||| || |||||||||||||||||||||||||| ||||| |||||  |||    
T  9329201 aacgaaatcacaatctggaaccctaacacccgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatc 9329102  T
Q  132 gcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccga 213  Q
    ||       ||||||||||||| ||||||| |||||| ||| |||| ||||||||||||||||||||| |||||||||||||    
T  9329101 gcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccga 9329020  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 9321578 - 9321399
Alignment:
Q  32 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 131  Q
    |||||||||||| ||| |||||||| ||||| ||| ||| | || |||||||| || |||||| |||||||| ||||| | || || || |||||  |||    
T  9321578 aacgaaatcacaatctggaaccctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatc 9321479  T
Q  132 gc-gcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagcc 211  Q
    || || | | |||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  9321478 gctgctgct-tatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggttagcc 9321399  T

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Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 9060665 - 9060836
Alignment:
Q  34 cgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgc 133  Q
    ||||| |||| ||| |||||||||||| |  ||| || |||  ||||||||| |||||||| ||||||||||||||   || ||||| |||    |||||    
T  9060665 cgaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatccctaacattgaggactctgacaaccccaatcgc 9060764  T
Q  134 gcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 205  Q
    |  ||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||||    
T  9060765 ggcggtatatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatcacttgg 9060836  T

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Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 10353731 - 10353553
Alignment:
Q  24 acgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaa 123  Q
    ||||||| |||||||||||| | | |||||| ||||| | ||| ||| ||||||||||||||||||||||| ||||||||||||||||  | ||||| ||    
T  10353731 acgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattctccaatctgacaa 10353632  T
Q  124 cattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctct 202  Q
    |  | | || |   |  |||||||||| |||||||||| |||| |  || |||||||||||||||||||||||||||||    
T  10353631 ccctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctct 10353553  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 10336337 - 10336273
Alignment:
Q  141 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 205  Q
    ||||||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||||||||||    
T  10336337 tatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctcttgg 10336273  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 8573142 - 8573200
Alignment:
Q  147 ttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 205  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||    
T  8573142 ttcacggcttcggttttgatctattaaccgccgattacaaactcctccgaatctcttgg 8573200  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 10372460 - 10372391
Alignment:
Q  35 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta 104  Q
    ||||||||| ||| |||||||||||| | |||||||||| |||||||||||||||||||| |||| ||||    
T  10372460 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 10372391  T

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Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 9275120 - 9275044
Alignment:
Q  35 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattct 111  Q
    ||||| ||| ||| ||||||||||||   ||||||| ||||||||||||||||||||||| |||| |||||||||||    
T  9275120 gaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctatacctaacattct 9275044  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 10372363 - 10372301
Alignment:
Q  141 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctctt 203  Q
    |||||||||| |||||||||| |||| | ||| |||||||| |||||||||||||||||||||    
T  10372363 tatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatctctt 10372301  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 7115271 - 7115340
Alignment:
Q  136 aggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 205  Q
    |||| ||||| ||||||||||||||| |||||| ||||| |  ||||||||||| |||||||||||||||    
T  7115271 aggtctatgctttcacggcttcggttttgatcctttaacagatgattacaaacttctcagaatctcttgg 7115340  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 9275000 - 9274915
Alignment:
Q  146 gttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctacattactcttttga 231  Q
    |||||||| || |||| |||||| ||| |||||||||| ||||| ||||||||||| ||| |||| ||  ||||||||||||||||    
T  9275000 gttcacggttttggttttgatcctttatccggcgattataaacttctcagaatctcatggttagctgatatacattactcttttga 9274915  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 10348284 - 10348227
Alignment:
Q  141 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaat 198  Q
    ||||||||||||||||||||| ||||| | || |||| ||||||||||||||||||||    
T  10348284 tatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaat 10348227  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 10348384 - 10348312
Alignment:
Q  32 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta 104  Q
    |||||||||||| ||| |||||||||||| | |||||||   ||||||||||||||||||||| |||| ||||    
T  10348384 aacgaaatcacaatctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattccta 10348312  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 26575483 - 26575304
Alignment:
Q  24 acgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaa 123  Q
    ||||||| ||||||||| || ||| ||||||| ||||   |||| || ||||||||||||||||||||||| | ||||||||||||||  | ||||| ||    
T  26575483 acgcccccaacgaaatcgcaatctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattctccaatctgacaa 26575384  T
Q  124 cattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctctt 203  Q
    |  | |||| |   |  ||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||    
T  26575383 ccctaatcgtggctgcttatgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctctt 26575304  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 37463100 - 37462927
Alignment:
Q  32 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 131  Q
    |||||||||||| ||| |||||||||||| | |||||||  ||||||||||||||||||| |  || ||||| ||||| | || ||  | |||  | | |    
T  37463100 aacgaaatcacaatctggaaccctaacacacgtaaacatctgattatcccttttctccctatgcctgtcccttacattatggaatcaaacaaccctaacc 37463001  T
Q  132 gcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 205  Q
    |||   |  ||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||    
T  37463000 gcggctgcttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctcttgg 37462927  T

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Target: scaffold0667 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 4976 - 4912
Alignment:
Q  141 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 205  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||||||    
T  4976 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcagactctcttgg 4912  T

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Target: scaffold0667; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 5079 - 5018
Alignment:
Q  32 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctct 93  Q
    |||||||||||| ||| |||||||||||  | |||||||   ||||||||||||||||||||    
T  5079 aacgaaatcacaatctggaaccctaacatccgtaaacatcacattatcccttttctccctct 5018  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 41966362 - 41966424
Alignment:
Q  143 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 205  Q
    ||||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  41966362 tgcgttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaatctcttgg 41966424  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 41966254 - 41966310
Alignment:
Q  35 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccct 91  Q
    ||||||||| ||| |||||||||||    ||||||| ||||||||||||||||||||    
T  41966254 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccct 41966310  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 29467429 - 29467489
Alignment:
Q  143 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttg 204  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||||    
T  29467429 tgcgttcacggcttcggttttgatccattaaccgatgattacaaact-ctcagaatctcttg 29467489  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 29452955 - 29453013
Alignment:
Q  146 gttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttg 204  Q
    ||||||||||| |||| |||||| |||| || |||||||||||||||||||||||||||    
T  29452955 gttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctcttg 29453013  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 29442970 - 29443027
Alignment:
Q  147 ttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttg 204  Q
    ||||||||||||||| ||||||||| |||  ||||||||||||| |||||||||||||    
T  29442970 ttcacggcttcggttttgatccattgaccaacgattacaaactcatcagaatctcttg 29443027  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 29423759 - 29423702
Alignment:
Q  143 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatct 200  Q
    |||||| |||||||||||| |||||||||||| |  |||||||||||||||| |||||    
T  29423759 tgcgtttacggcttcggttttgatccattaactgatgattacaaactcctcacaatct 29423702  T

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