View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_low_24 (Length: 237)
Name: NF5980_low_24
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25946982 - 25947203
Alignment:
| Q |
1 |
ctctaaaccaaaaggtctatgcccaaaatgcagaaacatggtctttagaaaccctcgaacaattgctagagttgcaaaataaattccttagtaaaagacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25946982 |
ctctaaaccaaaaggtctatgcccaaaatgcagaaacatggtctttagaaaccctcgaacaattgctagagttgcaaaataaattccttagtaaaagacg |
25947081 |
T |
|
| Q |
101 |
ttgaatttctttagggtttttgtatcagttattttctcttgatttgttgtctaaggatatcctagttttcttatgttttgtttcaatatcctacatgctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25947082 |
ttgaatttctttagggtttttgtatcagttattttctcttgatttgctgtctaaggatatcctagttttcttatgttttgtttcaatatcctacatgctg |
25947181 |
T |
|
| Q |
201 |
taaaattataggcagataatat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
25947182 |
taaaattataggcagataatat |
25947203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 2663198 - 2663304
Alignment:
| Q |
1 |
ctctaaaccaaaaggtctatgcccaaaatgcagaaacatggtctttagaaaccctcgaacaattgctagagttgcaaaataaattccttagtaaaagacg |
100 |
Q |
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||||||| |||||||||||||||||||||| || ||||||||||||||||| || |||| |||||||||||| || ||||||| ||||||||||||||| |
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| T |
2663198 |
ctctaaatcaaaaggtctatgcccaaaatgaggagacatggtctttagaaactcttgaacgattgctagagttacataataaatcccttagtaaaagacg |
2663297 |
T |
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| Q |
101 |
ttgaatt |
107 |
Q |
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|||||| |
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| T |
2663298 |
ctgaatt |
2663304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 2663349 - 2663462
Alignment:
| Q |
105 |
atttctttagggtttttgtatcagttattttctcttgatttgttgtctaaggatatcctagttttcttatgttttgtttcaatatcctacatgctgtaaa |
204 |
Q |
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||||| |||||| |||||||| |||||||| |||||||||||||| || ||||| ||| |||||| ||||||||||||||||| | ||| ||| | |
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| T |
2663349 |
atttccttagggattttgtatgagttattt-ctcttgatttgttggctcgtgatattgtag-tttcttgcgttttgtttcaatatccaaaatgttgt-ga |
2663445 |
T |
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| Q |
205 |
attataggcagataata |
221 |
Q |
| |
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||||||| ||||||||| |
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| T |
2663446 |
attatagacagataata |
2663462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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