View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5980_low_3 (Length: 639)

Name: NF5980_low_3
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5980_low_3
NF5980_low_3
[»] chr2 (19 HSPs)
chr2 (141-623)||(37837050-37837533)
chr2 (102-140)||(27290736-27290774)
chr2 (102-140)||(43374327-43374365)
chr2 (102-140)||(44946050-44946088)
chr2 (102-139)||(33827570-33827607)
chr2 (105-137)||(13266654-13266686)
chr2 (102-138)||(15038123-15038159)
chr2 (105-140)||(11941210-11941245)
chr2 (102-137)||(18692125-18692160)
chr2 (105-140)||(25293321-25293356)
chr2 (105-140)||(30466830-30466865)
chr2 (102-140)||(2140483-2140521)
chr2 (102-140)||(8259059-8259097)
chr2 (102-140)||(19054188-19054226)
chr2 (102-140)||(28669035-28669073)
chr2 (102-140)||(34516411-34516449)
chr2 (102-140)||(35171962-35172000)
chr2 (102-140)||(39957920-39957958)
chr2 (105-137)||(44929846-44929878)
[»] chr1 (16 HSPs)
chr1 (19-140)||(48699921-48700041)
chr1 (105-140)||(9500355-9500390)
chr1 (102-140)||(4621234-4621272)
chr1 (102-140)||(7766724-7766762)
chr1 (102-140)||(14603958-14603996)
chr1 (102-137)||(15059399-15059434)
chr1 (105-140)||(24122185-24122220)
chr1 (106-140)||(17935931-17935965)
chr1 (102-140)||(27454861-27454899)
chr1 (149-214)||(43139812-43139878)
chr1 (102-140)||(46607972-46608010)
chr1 (101-138)||(27159249-27159286)
chr1 (106-139)||(34778502-34778535)
chr1 (105-137)||(23041687-23041719)
chr1 (102-138)||(30677340-30677376)
chr1 (105-137)||(36155888-36155920)
[»] chr7 (23 HSPs)
chr7 (102-140)||(21835317-21835355)
chr7 (102-138)||(31197758-31197794)
chr7 (102-140)||(2751437-2751475)
chr7 (102-140)||(16374160-16374198)
chr7 (102-140)||(22120054-22120092)
chr7 (102-140)||(28089985-28090023)
chr7 (102-140)||(40542907-40542945)
chr7 (102-138)||(27312320-27312356)
chr7 (105-140)||(3851923-3851958)
chr7 (105-140)||(7275443-7275478)
chr7 (102-137)||(11998018-11998053)
chr7 (105-140)||(31712902-31712937)
chr7 (102-140)||(654702-654740)
chr7 (102-140)||(7175859-7175897)
chr7 (102-140)||(13332431-13332469)
chr7 (102-140)||(22299968-22300006)
chr7 (102-140)||(23092262-23092300)
chr7 (105-138)||(18044275-18044308)
chr7 (103-140)||(21217831-21217868)
chr7 (105-138)||(41907514-41907547)
chr7 (105-137)||(17196950-17196982)
chr7 (106-138)||(32849759-32849791)
chr7 (105-137)||(33137825-33137857)
[»] chr6 (16 HSPs)
chr6 (103-140)||(9844100-9844137)
chr6 (102-140)||(3222633-3222671)
chr6 (102-140)||(14213044-14213082)
chr6 (102-140)||(15360095-15360133)
chr6 (102-140)||(21982318-21982356)
chr6 (102-140)||(34147508-34147546)
chr6 (102-140)||(34160124-34160162)
chr6 (102-139)||(1345098-1345135)
chr6 (102-137)||(7491663-7491698)
chr6 (105-140)||(9690638-9690673)
chr6 (105-140)||(11449033-11449068)
chr6 (105-140)||(15730495-15730530)
chr6 (105-139)||(4797260-4797294)
chr6 (106-140)||(9239137-9239171)
chr6 (102-140)||(21148508-21148546)
chr6 (112-140)||(33718476-33718504)
[»] scaffold0576 (1 HSPs)
scaffold0576 (102-140)||(5079-5117)
[»] scaffold0070 (1 HSPs)
scaffold0070 (102-140)||(40486-40524)
[»] chr8 (18 HSPs)
chr8 (102-140)||(2639408-2639446)
chr8 (102-140)||(3734620-3734658)
chr8 (102-140)||(4718811-4718849)
chr8 (102-140)||(8765523-8765561)
chr8 (102-140)||(34237652-34237690)
chr8 (102-139)||(18532265-18532302)
chr8 (105-140)||(9713620-9713655)
chr8 (105-140)||(21603396-21603431)
chr8 (102-137)||(34610684-34610719)
chr8 (102-137)||(42328173-42328208)
chr8 (102-140)||(2618352-2618390)
chr8 (102-140)||(27746332-27746370)
chr8 (106-140)||(28193640-28193674)
chr8 (102-140)||(32879445-32879483)
chr8 (102-140)||(33747048-33747086)
chr8 (102-140)||(39349422-39349460)
chr8 (102-139)||(14633121-14633158)
chr8 (104-136)||(10544924-10544956)
[»] chr5 (20 HSPs)
chr5 (102-140)||(8484658-8484696)
chr5 (102-140)||(10631286-10631324)
chr5 (102-140)||(18207369-18207407)
chr5 (102-140)||(19456208-19456246)
chr5 (102-140)||(27498728-27498766)
chr5 (102-140)||(37495216-37495254)
chr5 (102-140)||(41351101-41351139)
chr5 (105-137)||(6014280-6014312)
chr5 (105-140)||(11926501-11926536)
chr5 (105-140)||(22693097-22693132)
chr5 (102-140)||(7085623-7085661)
chr5 (102-140)||(30485990-30486028)
chr5 (102-140)||(33709500-33709538)
chr5 (102-140)||(35425175-35425213)
chr5 (102-140)||(38630976-38631014)
chr5 (102-140)||(38684369-38684407)
chr5 (105-138)||(25750613-25750646)
chr5 (105-137)||(7151468-7151500)
chr5 (102-138)||(21236359-21236395)
chr5 (102-138)||(22392852-22392888)
[»] chr4 (18 HSPs)
chr4 (102-140)||(5609199-5609237)
chr4 (102-140)||(19660529-19660567)
chr4 (102-140)||(27528792-27528830)
chr4 (102-140)||(34844755-34844793)
chr4 (102-140)||(40058849-40058887)
chr4 (105-138)||(20566514-20566547)
chr4 (105-140)||(23639786-23639821)
chr4 (105-140)||(23645444-23645479)
chr4 (105-140)||(33696279-33696314)
chr4 (105-140)||(34723961-34723996)
chr4 (102-137)||(45787701-45787736)
chr4 (102-140)||(20077981-20078019)
chr4 (102-140)||(32986359-32986397)
chr4 (102-140)||(43719084-43719122)
chr4 (106-140)||(52983781-52983815)
chr4 (112-140)||(9517648-9517676)
chr4 (105-137)||(24672305-24672337)
chr4 (105-137)||(52494653-52494685)
[»] chr3 (27 HSPs)
chr3 (102-140)||(3747743-3747781)
chr3 (102-140)||(8097276-8097314)
chr3 (102-140)||(10083816-10083854)
chr3 (102-140)||(10190739-10190777)
chr3 (102-140)||(24165712-24165750)
chr3 (102-140)||(26174275-26174313)
chr3 (102-140)||(30807150-30807188)
chr3 (102-140)||(53424174-53424212)
chr3 (102-140)||(53848431-53848469)
chr3 (102-139)||(46576511-46576548)
chr3 (102-138)||(15566497-15566533)
chr3 (105-140)||(7485531-7485566)
chr3 (105-140)||(24407423-24407458)
chr3 (102-137)||(25289712-25289747)
chr3 (105-140)||(39041852-39041887)
chr3 (102-137)||(39206153-39206188)
chr3 (102-137)||(40133446-40133481)
chr3 (105-140)||(49258262-49258297)
chr3 (105-140)||(52821636-52821671)
chr3 (102-140)||(1178332-1178370)
chr3 (102-140)||(8456147-8456185)
chr3 (102-140)||(11390764-11390802)
chr3 (102-140)||(30257786-30257824)
chr3 (106-140)||(48105039-48105073)
chr3 (102-140)||(52455646-52455684)
chr3 (105-137)||(31537838-31537870)
chr3 (105-137)||(32151589-32151621)
[»] scaffold0102 (1 HSPs)
scaffold0102 (102-140)||(39254-39292)
[»] scaffold0051 (1 HSPs)
scaffold0051 (102-140)||(52868-52906)
[»] scaffold0026 (1 HSPs)
scaffold0026 (106-140)||(2478-2512)
[»] scaffold0019 (1 HSPs)
scaffold0019 (102-140)||(161971-162009)


Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 141 - 623
Target Start/End: Original strand, 37837050 - 37837533
Alignment:
Q  141 tatatattttcagtgttattctatgataccatatcttatgaagatatttcaacaatttctatactatccatttttccacatcatcgattcatggttccac 240  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  37837050 tatatattttcagtgttattctatgataccatatcttatggagatatttcaacaatttctatactatccatttttctacatcatggattcatggttccac 37837149  T
Q  241 caataaacagaaaaatttagatatagattcgtcaatggataatgttgcatcaagcgaatagttaattccgaaattgtccagaaatcatttctattggtca 340  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37837150 caataaaccgaaaaatttagatatagattcgtcaacggataatgttgcatcaagcgaatagttaattccgaaattgtcccgaaatcatttctattggtca 37837249  T
Q  341 agcaccaatgttttccgccca-tttcctattgtaagctgcctcatgcattttccccacaactttgaatattgacacgtagccttcgtgaatttcgggatg 439  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37837250 agcaccaatgttttccgcccaatttcctattgtaagctgcctcatgcattttccccacaactttgaatattgacacgtagccttcgtgaatttcgggatg 37837349  T
Q  440 atttttctagctatgtatagcagcgccgttgatcaacatataaatcctctttgacaccttcattgaagatagatgctcttaacagaagaaatgtaaactt 539  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37837350 atttttctcgctatgtatagcagcaccgttcatcaacatataaatcctctttgacaccttcattgaagatagatgctcttaacagaagaaatgtaaactt 37837449  T
Q  540 tcaacagaataatcaagctcaaaaatcggaatttagcagtagcatttcatatccaccttctccaaactgcactaaccaatatgt 623  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37837450 tcaacagaaaaatcaagctcaaaaatcggaatttagcagtagcatttcatatccaccttctccaaactgcactaaccaatatgt 37837533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 27290774 - 27290736
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  27290774 ttgaaaactcggtatccgatccaagaatcgactaatccg 27290736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 43374327 - 43374365
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  43374327 ttgaaaactcggtatccgatccaagaatcgactaatccg 43374365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 44946050 - 44946088
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  44946050 ttgaaaactcggtatccgatccaagaatcgactaatccg 44946088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 33827570 - 33827607
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatcc 139  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  33827570 ttgaaaactcggtatccgatccaagaatcgactaatcc 33827607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 13266686 - 13266654
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||||||||||||||||||||||||||||    
T  13266686 aaaactcgatatccgatccaagaatcgactaat 13266654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 15038159 - 15038123
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatc 138  Q
    ||||||||||| |||||||||||||||||||||||||    
T  15038159 ttgaaaactcggtatccgatccaagaatcgactaatc 15038123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 11941210 - 11941245
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  11941210 aaaactcggtatccgatccaagaatcgactaatccg 11941245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 18692160 - 18692125
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18692160 ttgaaaactcggtatccgatccaagaatcgactaat 18692125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 25293356 - 25293321
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  25293356 aaaactcggtatccgatccaagaatcgactaatccg 25293321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 30466830 - 30466865
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  30466830 aaaactcggtatccgatccaagaatcgactaatccg 30466865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 2140483 - 2140521
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  2140483 ttgaaaactcggtatccgatccaataatcgactaatccg 2140521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 8259097 - 8259059
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  8259097 ttgaaaactcagtatccgatccaagaatcgactaatccg 8259059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 19054226 - 19054188
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  19054226 ttgaaaactcggtatctgatccaagaatcgactaatccg 19054188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 28669073 - 28669035
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  28669073 ttgaaaactcggtatccgatccaaaaatcgactaatccg 28669035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 34516411 - 34516449
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  34516411 ttgaaaacttggtatccgatccaagaatcgactaatccg 34516449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 35172000 - 35171962
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  35172000 ttgaaaactcggtatccgattcaagaatcgactaatccg 35171962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 39957958 - 39957920
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  39957958 ttgaaaactcggtatccaatccaagaatcgactaatccg 39957920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 44929846 - 44929878
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||| ||||||||||||||||||||||||    
T  44929846 aaaactcggtatccgatccaagaatcgactaat 44929878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 48700041 - 48699921
Alignment:
Q  19 tatagtctatacataatttaattttaaaaagagagactatgacaaaaatggtacataatccaaattannnnnnnnnnnnnnnattgaaaactcgatatcc 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||               ||||||||||||||||||    
T  48700041 tatagtctatacataatttaattttaaaaagagagactacgacaaaaatggtacataatccaaatta-ttttttatttttttattgaaaactcgatatcc 48699943  T
Q  119 gatccaagaatcgactaatccg 140  Q
    ||||||||||||||||||||||    
T  48699942 gatccaagaatcgactaatccg 48699921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 9500355 - 9500390
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||||||||||||||||||||||||||||    
T  9500355 aaaactcgatatccgatccaagaatcgactaatccg 9500390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 4621234 - 4621272
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  4621234 ttgaaaactcggtatccgatccaagaatcgactaatccg 4621272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 7766724 - 7766762
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  7766724 ttgaaaactcgatatccgattcaagaatcgactaatccg 7766762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 14603996 - 14603958
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  14603996 ttgaaaactcggtatccgatccaagaatcgactaatccg 14603958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 15059399 - 15059434
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15059399 ttgaaaactcggtatccgatccaagaatcgactaat 15059434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 24122220 - 24122185
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  24122220 aaaactcggtatccgatccaagaatcgactaatccg 24122185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 17935965 - 17935931
Alignment:
Q  106 aaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  17935965 aaactcggtatccgatccaagaatcgactaatccg 17935931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 27454861 - 27454899
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  27454861 ttgaaaactaggtatccgatccaagaatcgactaatccg 27454899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 43139812 - 43139878
Alignment:
Q  149 ttcagtgttattctatgataccatatcttatg-aagatatttcaacaatttctatactatccatttt 214  Q
    |||| ||||||| ||||||| | ||||||||  |||||| ||||||||| |||||||||||||||||    
T  43139812 ttcaatgttattttatgataacgtatcttatttaagataattcaacaatctctatactatccatttt 43139878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 46608010 - 46607972
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  46608010 ttgaaaactcgatatccgatccaaggaccgactaatccg 46607972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 27159286 - 27159249
Alignment:
Q  101 attgaaaactcgatatccgatccaagaatcgactaatc 138  Q
    |||||||||||||||||||||||||  |||||||||||    
T  27159286 attgaaaactcgatatccgatccaaagatcgactaatc 27159249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 34778535 - 34778502
Alignment:
Q  106 aaactcgatatccgatccaagaatcgactaatcc 139  Q
    ||||||| ||||||||||||||||||||||||||    
T  34778535 aaactcggtatccgatccaagaatcgactaatcc 34778502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 23041719 - 23041687
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||| ||||||||||||||||||||||||    
T  23041719 aaaactcggtatccgatccaagaatcgactaat 23041687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 30677376 - 30677340
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatc 138  Q
    |||||||||||||||||| |||||||| |||||||||    
T  30677376 ttgaaaactcgatatccggtccaagaaccgactaatc 30677340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 36155888 - 36155920
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||| ||||||||||||||||||||||||    
T  36155888 aaaactcggtatccgatccaagaatcgactaat 36155920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 21835355 - 21835317
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21835355 ttgaaaactcgatatccgatccaagaatcgactaatccg 21835317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 31197794 - 31197758
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatc 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  31197794 ttgaaaactcgatatccgatccaagaatcgactaatc 31197758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 2751475 - 2751437
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  2751475 ttgaaaactcggtatccgatccaagaatcgactaatccg 2751437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 16374198 - 16374160
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  16374198 ttgaaaactcggtatccgatccaagaatcgactaatccg 16374160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 22120092 - 22120054
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  22120092 ttgaaaactcggtatccgatccaagaatcgactaatccg 22120054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 28090023 - 28089985
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  28090023 ttgaaaactcggtatccgatccaagaatcgactaatccg 28089985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 40542907 - 40542945
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  40542907 ttgaaaactcggtatccgatccaagaatcgactaatccg 40542945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 27312356 - 27312320
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatc 138  Q
    ||||||||||| |||||||||||||||||||||||||    
T  27312356 ttgaaaactcggtatccgatccaagaatcgactaatc 27312320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 3851958 - 3851923
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  3851958 aaaactcggtatccgatccaagaatcgactaatccg 3851923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 7275478 - 7275443
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  7275478 aaaactcggtatccgatccaagaatcgactaatccg 7275443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 11998053 - 11998018
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||| ||||||||||||||||||||||||    
T  11998053 ttgaaaactcggtatccgatccaagaatcgactaat 11998018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 31712902 - 31712937
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  31712902 aaaactcggtatccgatccaagaatcgactaatccg 31712937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 654702 - 654740
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  654702 ttgaaaactcggtatccgatccaagaaccgactaatccg 654740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 7175859 - 7175897
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  7175859 ttgaaaactcagtatccgatccaagaatcgactaatccg 7175897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 13332431 - 13332469
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  13332431 ttgaaaactcggtatctgatccaagaatcgactaatccg 13332469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 22300006 - 22299968
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  22300006 ttgaaaactcggtatccgattcaagaatcgactaatccg 22299968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 23092300 - 23092262
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  23092300 ttgaaaactcggtatccgatccatgaatcgactaatccg 23092262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 18044308 - 18044275
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatc 138  Q
    |||||||| |||||||||||||||||||||||||    
T  18044308 aaaactcggtatccgatccaagaatcgactaatc 18044275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 21217831 - 21217868
Alignment:
Q  103 tgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  21217831 tgaaaactcggtatccgatccaagaatcaactaatccg 21217868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 41907514 - 41907547
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatc 138  Q
    |||||||| |||||||||||||||||||||||||    
T  41907514 aaaactcggtatccgatccaagaatcgactaatc 41907547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 17196950 - 17196982
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||| ||||||||||||||||||||||||    
T  17196950 aaaactcggtatccgatccaagaatcgactaat 17196982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 32849791 - 32849759
Alignment:
Q  106 aaactcgatatccgatccaagaatcgactaatc 138  Q
    ||||||| |||||||||||||||||||||||||    
T  32849791 aaactcggtatccgatccaagaatcgactaatc 32849759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 33137825 - 33137857
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||||||||||||| ||||||||||||||    
T  33137825 aaaactcgatatccgatctaagaatcgactaat 33137857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 9844137 - 9844100
Alignment:
Q  103 tgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9844137 tgaaaactcgatatccgatccaagaatcgactaatccg 9844100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 3222633 - 3222671
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  3222633 ttgaaaactcggtatccgatccaagaatcgactaatccg 3222671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 14213082 - 14213044
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  14213082 ttgaaaactcggtatccgatccaagaatcgactaatccg 14213044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 15360095 - 15360133
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  15360095 ttgaaaactcggtatccgatccaagaatcgactaatccg 15360133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 21982318 - 21982356
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  21982318 ttgaaaactcggtatccgatccaagaatcgactaatccg 21982356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 34147546 - 34147508
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  34147546 ttgaaaactcggtatccgatccaagaatcgactaatccg 34147508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 34160162 - 34160124
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  34160162 ttgaaaactcggtatccgatccaagaatcgactaatccg 34160124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 1345135 - 1345098
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatcc 139  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  1345135 ttgaaaactcggtatccgatccaagaatcgactaatcc 1345098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 7491663 - 7491698
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7491663 ttgaaaactcggtatccgatccaagaatcgactaat 7491698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 9690638 - 9690673
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  9690638 aaaactcggtatccgatccaagaatcgactaatccg 9690673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 11449068 - 11449033
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||||||||| ||||||||||||||||||    
T  11449068 aaaactcgatatccgattcaagaatcgactaatccg 11449033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 15730495 - 15730530
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||||||||||||| |||||||||||||||||    
T  15730495 aaaactcgatatccgatcaaagaatcgactaatccg 15730530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 4797294 - 4797260
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatcc 139  Q
    |||||||| ||||||||||||||||||||||||||    
T  4797294 aaaactcgttatccgatccaagaatcgactaatcc 4797260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 9239171 - 9239137
Alignment:
Q  106 aaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  9239171 aaactcggtatccgatccaagaatcgactaatccg 9239137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 21148508 - 21148546
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  21148508 ttgaaaactcggtatccgattcaagaatcgactaatccg 21148546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 33718476 - 33718504
Alignment:
Q  112 gatatccgatccaagaatcgactaatccg 140  Q
    |||||||||||||||||||||||||||||    
T  33718476 gatatccgatccaagaatcgactaatccg 33718504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 5079 - 5117
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  5079 ttgaaaactcggtatccgatccaagaatcgactaatccg 5117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 40524 - 40486
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  40524 ttgaaaactcggtatccgatccaagaatcgactaatccg 40486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 2639408 - 2639446
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  2639408 ttgaaaactcggtatccgatccaagaatcgactaatccg 2639446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 3734620 - 3734658
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  3734620 ttgaaaactcggtatccgatccaagaatcgactaatccg 3734658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 4718849 - 4718811
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  4718849 ttgaaaactcggtatccgatccaagaatcgactaatccg 4718811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 8765523 - 8765561
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  8765523 ttgaaaactcggtatccgatccaagaatcgactaatccg 8765561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 34237652 - 34237690
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  34237652 ttgaaaactcggtatccgatccaagaatcgactaatccg 34237690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 18532302 - 18532265
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatcc 139  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  18532302 ttgaaaactcggtatccgatccaagaatcgactaatcc 18532265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 9713655 - 9713620
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  9713655 aaaactcggtatccgatccaagaatcgactaatccg 9713620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 21603431 - 21603396
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  21603431 aaaactcggtatccgatccaagaatcgactaatccg 21603396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 34610684 - 34610719
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||| ||||||||||||||||||||||||    
T  34610684 ttgaaaactcggtatccgatccaagaatcgactaat 34610719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 42328208 - 42328173
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||| ||||||||||||||||||||||||    
T  42328208 ttgaaaactcggtatccgatccaagaatcgactaat 42328173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 2618390 - 2618352
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  2618390 ttgaaaactcggaatccgatccaagaatcgactaatccg 2618352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 27746332 - 27746370
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  27746332 ttgaaaaatcgatattcgatccaagaatcgactaatccg 27746370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 28193674 - 28193640
Alignment:
Q  106 aaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  28193674 aaactcggtatccgatccaagaatcgactaatccg 28193640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 32879483 - 32879445
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  32879483 ttgaaaactcggtatccaatccaagaatcgactaatccg 32879445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 33747086 - 33747048
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  33747086 ttgaaaactcggtatccgatccaaggatcgactaatccg 33747048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 39349460 - 39349422
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  39349460 ttgaaaacttggtatccgatccaagaatcgactaatccg 39349422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 14633158 - 14633121
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatcc 139  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  14633158 ttgaaaacttggtatccgatccaagaatcgactaatcc 14633121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 10544924 - 10544956
Alignment:
Q  104 gaaaactcgatatccgatccaagaatcgactaa 136  Q
    ||||||||| |||||||||||||||||||||||    
T  10544924 gaaaactcggtatccgatccaagaatcgactaa 10544956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 8484658 - 8484696
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  8484658 ttgaaaactcggtatccgatccaagaatcgactaatccg 8484696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 10631286 - 10631324
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  10631286 ttgaaaactcggtatccgatccaagaatcgactaatccg 10631324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 18207407 - 18207369
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  18207407 ttgaaaactcggtatccgatccaagaatcgactaatccg 18207369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 19456208 - 19456246
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  19456208 ttgaaaactcggtatccgatccaagaatcgactaatccg 19456246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 27498728 - 27498766
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  27498728 ttgaaaactcggtatccgatccaagaatcgactaatccg 27498766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 37495254 - 37495216
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  37495254 ttgaaaactcggtatccgatccaagaatcgactaatccg 37495216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 41351101 - 41351139
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  41351101 ttgaaaactcggtatccgatccaagaatcgactaatccg 41351139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 6014280 - 6014312
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||||||||||||||||||||||||||||    
T  6014280 aaaactcgatatccgatccaagaatcgactaat 6014312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 11926501 - 11926536
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  11926501 aaaactcggtatccgatccaagaatcgactaatccg 11926536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 22693132 - 22693097
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  22693132 aaaactcggtatccgatccaagaatcgactaatccg 22693097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 7085623 - 7085661
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  7085623 ttgaaaactcggtatccgattcaagaatcgactaatccg 7085661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 30486028 - 30485990
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  30486028 ttgaaaactcggtatccgatccaagaattgactaatccg 30485990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 33709500 - 33709538
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| || |||||||||||||||||||||||||||    
T  33709500 ttgaaaacacggtatccgatccaagaatcgactaatccg 33709538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 35425213 - 35425175
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  35425213 ttgaaaattcggtatccgatccaagaatcgactaatccg 35425175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 38630976 - 38631014
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  38630976 ttgaaaactcggtatccgatccaagaatcgattaatccg 38631014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 38684407 - 38684369
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  38684407 ttgaaaaatcggtatccgatccaagaatcgactaatccg 38684369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 25750613 - 25750646
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatc 138  Q
    |||||||| |||||||||||||||||||||||||    
T  25750613 aaaactcggtatccgatccaagaatcgactaatc 25750646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 7151500 - 7151468
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||| ||||||||||||||||||||||||    
T  7151500 aaaactcggtatccgatccaagaatcgactaat 7151468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 21236359 - 21236395
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatc 138  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  21236359 ttgaaaactcggtatccgattcaagaatcgactaatc 21236395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 22392888 - 22392852
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatc 138  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  22392888 ttgaaaactcggtatccgatccaaaaatcgactaatc 22392852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 5609199 - 5609237
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  5609199 ttgaaaactcggtatccgatccaagaatcgactaatccg 5609237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 19660529 - 19660567
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  19660529 ttgaaaactcggtatccgatccaagaatcgactaatccg 19660567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 27528792 - 27528830
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  27528792 ttgaaaactcggtatccgatccaagaatcgactaatccg 27528830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 34844755 - 34844793
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  34844755 ttgaaaactcggtatccgatccaagaatcgactaatccg 34844793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 40058849 - 40058887
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  40058849 ttgaaaactcggtatccgatccaagaatcgactaatccg 40058887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 20566547 - 20566514
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatc 138  Q
    ||||||||||||||||||||||||||||||||||    
T  20566547 aaaactcgatatccgatccaagaatcgactaatc 20566514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 23639821 - 23639786
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  23639821 aaaactcggtatccgatccaagaatcgactaatccg 23639786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 23645479 - 23645444
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  23645479 aaaactcggtatccgatccaagaatcgactaatccg 23645444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 33696279 - 33696314
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33696279 aaaactcgatatccgatccaagaattgactaatccg 33696314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 34723996 - 34723961
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  34723996 aaaactcggtatccgatccaagaatcgactaatccg 34723961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 45787701 - 45787736
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||| ||||||||||||||||||||||||    
T  45787701 ttgaaaactcggtatccgatccaagaatcgactaat 45787736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 20077981 - 20078019
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  20077981 ttgacaactcggtatccgatccaagaatcgactaatccg 20078019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 32986397 - 32986359
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  32986397 ttgaaaactcggtatccgatccaagaatcgactattccg 32986359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 43719084 - 43719122
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  43719084 ttgaaaattcggtatccgatccaagaatcgactaatccg 43719122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 52983815 - 52983781
Alignment:
Q  106 aaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  52983815 aaactcggtatccgatccaagaatcgactaatccg 52983781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 9517648 - 9517676
Alignment:
Q  112 gatatccgatccaagaatcgactaatccg 140  Q
    |||||||||||||||||||||||||||||    
T  9517648 gatatccgatccaagaatcgactaatccg 9517676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 24672305 - 24672337
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||| ||||||||||||||||||||||||    
T  24672305 aaaactcggtatccgatccaagaatcgactaat 24672337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 52494685 - 52494653
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||| ||||||||||||||||||||||||    
T  52494685 aaaactcggtatccgatccaagaatcgactaat 52494653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 3747781 - 3747743
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  3747781 ttgaaaactcggtatccgatccaagaatcgactaatccg 3747743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 8097276 - 8097314
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  8097276 ttgaaaactcggtatccgatccaagaatcgactaatccg 8097314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 10083816 - 10083854
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  10083816 ttgaaaactcggtatccgatccaagaatcgactaatccg 10083854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 10190739 - 10190777
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  10190739 ttgaaaactcggtatccgatccaagaatcgactaatccg 10190777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 24165712 - 24165750
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  24165712 ttgaaaactcggtatccgatccaagaatcgactaatccg 24165750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 26174313 - 26174275
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  26174313 ttgaaaactcggtatccgatccaagaatcgactaatccg 26174275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 30807150 - 30807188
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30807150 ttgaaaactcggtatccgatccaagaatcgactaatccg 30807188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 53424174 - 53424212
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  53424174 ttgaaaactcggtatccgatccaagaatcgactaatccg 53424212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 53848431 - 53848469
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  53848431 ttgaaaactcggtatccgatccaagaatcgactaatccg 53848469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 46576548 - 46576511
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatcc 139  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  46576548 ttgaaaactcggtatccgatccaagaatcgactaatcc 46576511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 15566497 - 15566533
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatc 138  Q
    ||||||||||| |||||||||||||||||||||||||    
T  15566497 ttgaaaactcggtatccgatccaagaatcgactaatc 15566533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 7485531 - 7485566
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  7485531 aaaactcggtatccgatccaagaatcgactaatccg 7485566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 24407458 - 24407423
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  24407458 aaaactcggtatccgatccaagaatcgactaatccg 24407423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 25289712 - 25289747
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25289712 ttgaaaactcggtatccgatccaagaatcgactaat 25289747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 39041852 - 39041887
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  39041852 aaaactcggtatccgatccaagaatcgactaatccg 39041887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 39206153 - 39206188
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||||||||||||| ||||||||||||||    
T  39206153 ttgaaaactcgatatccgatctaagaatcgactaat 39206188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 40133446 - 40133481
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40133446 ttgaaaactcggtatccgatccaagaatcgactaat 40133481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 49258262 - 49258297
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  49258262 aaaactcggtatccgatccaagaatcgactaatccg 49258297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 52821636 - 52821671
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  52821636 aaaactcggtatccgatccaagaatcgactaatccg 52821671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 1178370 - 1178332
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  1178370 ttgaaaactcggtatccgatccaagattcgactaatccg 1178332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 8456147 - 8456185
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  8456147 ttgaaaactcggtatccgattcaagaatcgactaatccg 8456185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 11390802 - 11390764
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  11390802 ttgaaaactcagtatccgatccaagaatcgactaatccg 11390764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 30257824 - 30257786
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  30257824 ttgaaaattcggtatccgatccaagaatcgactaatccg 30257786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 48105073 - 48105039
Alignment:
Q  106 aaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  48105073 aaactcggtatccgatccaagaatcgactaatccg 48105039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 52455646 - 52455684
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  52455646 ttgaaaactcggtatccaatccaagaatcgactaatccg 52455684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 31537838 - 31537870
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    ||||||||||||||||||||||||| |||||||    
T  31537838 aaaactcgatatccgatccaagaattgactaat 31537870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 32151621 - 32151589
Alignment:
Q  105 aaaactcgatatccgatccaagaatcgactaat 137  Q
    |||||||| ||||||||||||||||||||||||    
T  32151621 aaaactcggtatccgatccaagaatcgactaat 32151589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 39292 - 39254
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  39292 ttgaaaactcggtatctgatccaagaatcgactaatccg 39254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 52868 - 52906
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  52868 ttgaaaactcggtatccgattcaagaatcgactaatccg 52906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 2478 - 2512
Alignment:
Q  106 aaactcgatatccgatccaagaatcgactaatccg 140  Q
    |||||||||||||||| ||||||||||||||||||    
T  2478 aaactcgatatccgattcaagaatcgactaatccg 2512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 162009 - 161971
Alignment:
Q  102 ttgaaaactcgatatccgatccaagaatcgactaatccg 140  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  162009 ttgaaaactcggtatctgatccaagaatcgactaatccg 161971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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