View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_low_5 (Length: 500)
Name: NF5980_low_5
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_low_5 |
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| [»] scaffold0053 (2 HSPs) |
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Alignment Details
Target: scaffold0053 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 294 - 484
Target Start/End: Original strand, 28864 - 29051
Alignment:
| Q |
294 |
cccccttttgtcaacaacaaaaataaggaagaagaaaagataatagaagaagatgttatacaacaatagagtttacacaaatatacaatctaaatgttct |
393 |
Q |
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| T |
28864 |
cccccttttgtcaacaacaaaaataaggaagaagaaaagataatagaa---gatgttatacaacaatagagtttacacaaatatacaatctaaatgttct |
28960 |
T |
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| Q |
394 |
tgtacataaatataaattaaagcagataaaaggtgtgctaaataaatttagggagcacaaccatcagaatcttcacatttgagcttgtttc |
484 |
Q |
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| T |
28961 |
tgtacataaatataaattaaagcagataaaaggtgtgctaaataaatttagggagcacaaccatcagaatcttcacatttgagcttgtttc |
29051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 28743 - 28803
Alignment:
| Q |
173 |
ttcagacttagatttcacgtaaaatgctttttgttttgttccccttggacaaacttccata |
233 |
Q |
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| T |
28743 |
ttcagacttagatttcacgtaaaatgctttttgttttgttccccttggacaaacttccata |
28803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 29410573 - 29410710
Alignment:
| Q |
18 |
taaataaaggataaacttattagaaatttagtttgtattagactcttagacatatcagaaccactcaagtctgattagtctagt-aagtctgatagcttc |
116 |
Q |
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| T |
29410573 |
taaattaagaataaacttattagaactttagcttatatcagactcttagacacatcggaactactaaagtatgattagtctagtcaagtatgttaacttc |
29410672 |
T |
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| Q |
117 |
ttcagaatatgataaattttcaatcaagcgcatattaa |
154 |
Q |
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| T |
29410673 |
ttttgagtatgacaagttttcaattaagcgcaaattaa |
29410710 |
T |
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