View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5980_low_6 (Length: 479)
Name: NF5980_low_6
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5980_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 37836588 - 37837011
Alignment:
| Q |
16 |
ataattttggagttcagaatatactaaaatagaaatagcttgttttatagtatcaatattaaaatatggaatcaagaatactctgtaaaagaaaaactat |
115 |
Q |
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| T |
37836588 |
ataattttagagttcagaatatactaaaatagaaatagcttgttttatagtatcaatattaaaatatggaatcaagaatactctgtaaaagaaaaactat |
37836687 |
T |
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| Q |
116 |
gttatttgattaattaagggcttgatagttttattcaattattgtttcttagagcatctccgatgctcattttttaggcaacatactttggattttatac |
215 |
Q |
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| T |
37836688 |
gttatttgattaattaaggggttgatagttttattcaattattgtttcttagagcatctccgattctcattttttaggcaacatactttggattttatac |
37836787 |
T |
|
| Q |
216 |
actactaaaaaatattcatcatgttcatgtgactttgtgagtgtaaatcagtttacgggaggaatgcatattgttatatgtagggatcggaattcgaact |
315 |
Q |
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| T |
37836788 |
actactaaaaaatattcatcatgttcatgtgactttgagagtgtaaatcagtttacacgaggaatgcatattgttatatgtagggatcagaattcgaact |
37836887 |
T |
|
| Q |
316 |
ctaaacatccaatttattcattttaaaaaatgaatttcaaccactagattactcgatcaagaaactatggttcatcattgtcacatcaaatttacgccac |
415 |
Q |
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| T |
37836888 |
ctaaacacctaatttattcaccttaaaaaatgaatttcaactactagattacttgatcaagaaactatggttcatcattgtcacatcaaatttacgccac |
37836987 |
T |
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| Q |
416 |
tcatatctattttactccaaaagt |
439 |
Q |
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| T |
37836988 |
tcatatatattttactccaaaagt |
37837011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 41004566 - 41004633
Alignment:
| Q |
285 |
attgttatatgtagggatcggaattcgaactctaaacatccaatttattcattttaaaaaatgaattt |
352 |
Q |
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| T |
41004566 |
attgttatatgtaggcgtcgaaattcaaactctaaacacccaatttatttaccttaaaaaatgaattt |
41004633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 26818008 - 26818074
Alignment:
| Q |
285 |
attgttatatgtagggatcggaattcgaactctaaacatccaatttattcattttaaaaaatgaatt |
351 |
Q |
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| T |
26818008 |
attgttatatgtaggggtcggactacgaactttgaacaccctatttattcactttaaaaaatgaatt |
26818074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 369
Target Start/End: Original strand, 22854629 - 22854708
Alignment:
| Q |
289 |
ttatatgtagggatcggaattcgaactctaaacatccaatttattcattttaaaaaatgaatttcaaccactagattactc |
369 |
Q |
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| T |
22854629 |
ttatatgcaggggtcggacttcaaaccccaaacatcccatttattcactttaaaa-atgaattccaaccactagactactc |
22854708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 43327039 - 43327100
Alignment:
| Q |
284 |
tattgttatatgtagggatcggaattcgaactctaaacatccaatttattcattttaaaaaa |
345 |
Q |
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| T |
43327039 |
tattgttatatgcaggggtcgaagttcgaaccctaaacatcccacttattcattttaaaaaa |
43327100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 368
Target Start/End: Complemental strand, 34870346 - 34870262
Alignment:
| Q |
285 |
attgttatatgtagggatcggaattcgaactctaaacatccaatttattcattttaaaaaa-tgaatttcaaccactagattact |
368 |
Q |
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| T |
34870346 |
attgttatatgcaggggtcggagttcgaaccatatatatcccacttattcattttgaaaaagtgaattttaaccactagattact |
34870262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 26321807 - 26321754
Alignment:
| Q |
308 |
ttcgaactctaaacatccaatttattcattttaaaaaatgaatttcaaccacta |
361 |
Q |
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| T |
26321807 |
ttcgaaccctgaacacccaatttattcactttaaaaaataaattttaaccacta |
26321754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 363
Target Start/End: Original strand, 33536290 - 33536333
Alignment:
| Q |
320 |
acatccaatttattcattttaaaaaatgaatttcaaccactaga |
363 |
Q |
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| T |
33536290 |
acatccaatttattcattttataaggtgaatttcaaccactaga |
33536333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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