View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5980_low_8 (Length: 427)

Name: NF5980_low_8
Description: NF5980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5980_low_8
NF5980_low_8
[»] chr4 (27 HSPs)
chr4 (1-385)||(6617132-6617516)
chr4 (164-294)||(6774159-6774289)
chr4 (1-79)||(26974715-26974793)
chr4 (1-87)||(54440561-54440647)
chr4 (1-74)||(19528872-19528945)
chr4 (1-74)||(34789853-34789926)
chr4 (1-74)||(46737125-46737198)
chr4 (1-77)||(36168329-36168405)
chr4 (1-74)||(12593493-12593566)
chr4 (1-74)||(21034707-21034780)
chr4 (1-74)||(33689832-33689905)
chr4 (1-74)||(55677428-55677501)
chr4 (11-76)||(14439829-14439894)
chr4 (1-74)||(24851936-24852009)
chr4 (1-74)||(34807119-34807192)
chr4 (1-77)||(41608374-41608450)
chr4 (1-74)||(41608885-41608958)
chr4 (1-70)||(45838554-45838623)
chr4 (11-74)||(35644042-35644105)
chr4 (1-74)||(28465084-28465157)
chr4 (2-78)||(40160561-40160637)
chr4 (314-361)||(6774074-6774121)
chr4 (1-87)||(21034225-21034311)
chr4 (1-74)||(28465551-28465624)
chr4 (1-74)||(34789385-34789458)
chr4 (1-74)||(56077794-56077867)
chr4 (1-77)||(28166004-28166080)
[»] chr8 (17 HSPs)
chr8 (1-74)||(16578111-16578184)
chr8 (1-76)||(18050061-18050136)
chr8 (1-74)||(599535-599608)
chr8 (1-74)||(15255856-15255929)
chr8 (1-74)||(28254896-28254969)
chr8 (1-74)||(9796729-9796802)
chr8 (1-79)||(35694348-35694426)
chr8 (1-74)||(6115581-6115654)
chr8 (1-74)||(34799553-34799626)
chr8 (1-74)||(7911086-7911159)
chr8 (1-82)||(18428232-18428313)
chr8 (1-74)||(35427282-35427355)
chr8 (1-74)||(35693871-35693944)
chr8 (1-74)||(42035775-42035848)
chr8 (1-55)||(41260731-41260785)
chr8 (1-74)||(7910619-7910692)
chr8 (1-77)||(28877359-28877435)
[»] chr5 (13 HSPs)
chr5 (1-75)||(14340880-14340954)
chr5 (7-74)||(32697702-32697769)
chr5 (1-74)||(18150194-18150267)
chr5 (1-74)||(28289687-28289760)
chr5 (1-74)||(15115562-15115635)
chr5 (1-74)||(21371166-21371239)
chr5 (1-73)||(38900648-38900720)
chr5 (1-74)||(5162039-5162112)
chr5 (1-75)||(4966818-4966892)
chr5 (1-75)||(14340400-14340474)
chr5 (1-74)||(4967241-4967314)
chr5 (1-74)||(15029779-15029852)
chr5 (1-74)||(38901110-38901183)
[»] chr7 (25 HSPs)
chr7 (1-74)||(7732491-7732564)
chr7 (1-74)||(27245206-27245279)
chr7 (1-74)||(24929778-24929851)
chr7 (1-74)||(39388738-39388811)
chr7 (1-83)||(11973872-11973954)
chr7 (1-79)||(26048416-26048494)
chr7 (1-71)||(35161272-35161342)
chr7 (1-74)||(5333883-5333956)
chr7 (1-74)||(16081769-16081842)
chr7 (1-74)||(25637200-25637273)
chr7 (1-74)||(48247590-48247663)
chr7 (1-77)||(787256-787332)
chr7 (1-76)||(26026318-26026393)
chr7 (1-76)||(28687969-28688043)
chr7 (1-74)||(9181882-9181955)
chr7 (1-74)||(14311318-14311391)
chr7 (21-77)||(5184428-5184484)
chr7 (2-74)||(5746112-5746183)
chr7 (1-74)||(786785-786858)
chr7 (1-74)||(5334289-5334362)
chr7 (1-75)||(25637668-25637742)
chr7 (1-42)||(2758168-2758209)
chr7 (1-74)||(9181535-9181608)
chr7 (1-74)||(15712368-15712441)
chr7 (1-74)||(34595242-34595315)
[»] chr3 (36 HSPs)
chr3 (1-74)||(49720374-49720447)
chr3 (1-74)||(49952016-49952089)
chr3 (1-77)||(16689358-16689434)
chr3 (1-74)||(30513725-30513798)
chr3 (1-74)||(41998698-41998771)
chr3 (1-74)||(46013425-46013498)
chr3 (1-74)||(51827960-51828033)
chr3 (1-74)||(14654659-14654732)
chr3 (1-74)||(39010078-39010151)
chr3 (1-77)||(32730389-32730465)
chr3 (1-81)||(40275089-40275169)
chr3 (1-80)||(43678754-43678833)
chr3 (1-78)||(40839122-40839199)
chr3 (1-74)||(51828542-51828615)
chr3 (1-74)||(52237287-52237360)
chr3 (1-74)||(52375801-52375874)
chr3 (1-77)||(40838652-40838728)
chr3 (2-74)||(44676475-44676547)
chr3 (1-71)||(34105120-34105190)
chr3 (1-74)||(14654202-14654275)
chr3 (1-74)||(25534893-25534966)
chr3 (1-74)||(40275564-40275636)
chr3 (1-74)||(47431699-47431772)
chr3 (1-73)||(329850-329922)
chr3 (1-77)||(49951546-49951622)
chr3 (1-77)||(51473326-51473402)
chr3 (12-75)||(22370598-22370661)
chr3 (2-77)||(27199702-27199777)
chr3 (1-74)||(330306-330379)
chr3 (1-74)||(2044274-2044347)
chr3 (1-74)||(2051298-2051371)
chr3 (1-54)||(38535765-38535818)
chr3 (1-74)||(51472858-51472931)
chr3 (1-42)||(55389640-55389681)
chr3 (1-74)||(55390067-55390140)
chr3 (1-77)||(44676942-44677018)
[»] chr2 (25 HSPs)
chr2 (1-74)||(38007953-38008026)
chr2 (1-77)||(15550673-15550749)
chr2 (1-84)||(33920606-33920688)
chr2 (1-74)||(4808882-4808955)
chr2 (1-74)||(20128207-20128280)
chr2 (1-74)||(25336070-25336143)
chr2 (1-74)||(43160012-43160085)
chr2 (2-74)||(16953405-16953477)
chr2 (1-76)||(9330265-9330340)
chr2 (9-75)||(5561018-5561084)
chr2 (1-74)||(649530-649603)
chr2 (1-74)||(4355758-4355831)
chr2 (1-74)||(6949914-6949987)
chr2 (1-74)||(42192713-42192786)
chr2 (1-74)||(43216179-43216252)
chr2 (1-73)||(16175820-16175892)
chr2 (1-74)||(6949454-6949527)
chr2 (1-74)||(42192243-42192316)
chr2 (1-53)||(11540108-11540160)
chr2 (16-74)||(32418162-32418220)
chr2 (1-77)||(63434-63510)
chr2 (1-74)||(62960-63033)
chr2 (1-74)||(24140144-24140217)
chr2 (1-74)||(33921082-33921155)
chr2 (1-74)||(38008421-38008494)
[»] chr1 (20 HSPs)
chr1 (1-74)||(29438933-29439006)
chr1 (1-74)||(10278551-10278624)
chr1 (1-74)||(16298685-16298758)
chr1 (1-74)||(34555382-34555455)
chr1 (1-74)||(30786774-30786848)
chr1 (1-74)||(23340186-23340259)
chr1 (1-74)||(44582060-44582133)
chr1 (1-77)||(37421160-37421236)
chr1 (1-77)||(39485065-39485141)
chr1 (1-75)||(17641839-17641913)
chr1 (1-74)||(50304442-50304515)
chr1 (1-52)||(52335980-52336031)
chr1 (1-55)||(444021-444075)
chr1 (1-75)||(45048157-45048231)
chr1 (1-74)||(1837508-1837581)
chr1 (1-74)||(2868178-2868251)
chr1 (1-74)||(9992625-9992698)
chr1 (1-77)||(8230111-8230187)
chr1 (1-72)||(4080026-4080097)
chr1 (1-78)||(50305255-50305332)
[»] chr6 (8 HSPs)
chr6 (1-79)||(31073612-31073690)
chr6 (1-74)||(5120939-5121012)
chr6 (1-74)||(31574195-31574268)
chr6 (1-77)||(25468849-25468925)
chr6 (1-83)||(28636286-28636368)
chr6 (2-74)||(29891083-29891155)
chr6 (23-74)||(30250724-30250775)
chr6 (1-74)||(5114471-5114544)
[»] scaffold0712 (1 HSPs)
scaffold0712 (1-77)||(6866-6942)
[»] scaffold0709 (1 HSPs)
scaffold0709 (1-77)||(6884-6960)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-74)||(46269-46342)


Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 6617132 - 6617516
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccattttataaataaggttttcctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6617132 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtcaaaatgcaagtagcaaaaatgtaattaaaccattttataaataaggttttcctg 6617231  T
Q  101 tgtttcatattgaaaattttacgtaaacaccacaattgacaccaagagatattgttgtcgggcgtaaatcaatggcaatatcatcaagttgacaacgcgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6617232 tgtttcatattgaaaattttacgtaaacaccacaattgacaccaagagatattgttgtcgggcgtaaatcaatggcaatatcatcaagttgacaacgcgc 6617331  T
Q  201 aacggctaaacatggtactcctgtaccagaggttgtagcgccttgcgcacaatgacccaccacctgcaataaaggccttagtttgggggaacaataaata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6617332 aacggctaaacatggtactcctgtaccagaggttgtagcgccttgcgcacaatgacccaccacctgcaataaaggccttagtttgggggaacaataaata 6617431  T
Q  301 tgggaaactgattagtacgaagcatcacatgacgaattttcacgaaaccattttgacagttacactatgttggatcaccttcaca 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6617432 tgggaaactgattagtacgaagcatcacatgacgaattttcacgaaaccattttgacagttacactatgttggatcaccttcaca 6617516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 294
Target Start/End: Complemental strand, 6774289 - 6774159
Alignment:
Q  164 gtaaatcaatggcaatatcatcaagttgacaacgcgcaacggctaaacatggtactcctgtaccagaggttgtagcgccttgcgcacaatgacccaccac 263  Q
    |||||||||| ||||||||||||||||| ||||| ||||| ||| ||    |||||| ||  |||||||||| ||  |||  | ||||||||||||||||    
T  6774289 gtaaatcaatagcaatatcatcaagttgccaacgtgcaactgctcaagcaagtactcgtgcgccagaggttgaagaccctcactcacaatgacccaccac 6774190  T
Q  264 ctgcaataaaggccttagtttgggggaacaa 294  Q
    ||| |||||||||||||||||| ||||||||    
T  6774189 ctgaaataaaggccttagtttgagggaacaa 6774159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 26974715 - 26974793
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccat 79  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| | |||||||||| | ||||||||||||||| ||||    
T  26974715 attttgttcgatttaaaagaggtaggaccaatttcgtgaattattcaaaatgcaaggaccaaaaatgtaattaacccat 26974793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 54440647 - 54440561
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccattttataaa 87  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||  | |||||||||    
T  54440647 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaagtctttttataaa 54440561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19528945 - 19528872
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||||||||||||||||||||||||||||||||||||| || || |||||||||| | ||||| |||||||||    
T  19528945 attttattcgatttaaaagaggtaggaccaatttcgtgaattggtcaaaatgcaaggaccaaaagtgtaattaa 19528872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34789853 - 34789926
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  34789853 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 34789926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46737125 - 46737198
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  46737125 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 46737198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36168405 - 36168329
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||||||||| ||||||||||||| ||| || |||||||||| ||||||| ||||||||||||    
T  36168405 attttgttcgatttaaaagaggtaagaccaatttcgtgggttggtcaaaatgcaaggagcaaaagtgtaattaaacc 36168329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 12593493 - 12593566
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  12593493 attttgttcgatttaaaagaggtatgaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 12593566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21034707 - 21034780
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||| |||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  21034707 attttgttcgatttaaaagagataggaccaatttcgtgagttggtcaaaatgcaaggaccaaaattgtaattaa 21034780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33689905 - 33689832
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||| ||||||| || |||||||||| | ||||| |||||||||    
T  33689905 attttgttcgatttaaaagaggtaggaccaattttgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 33689832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 55677428 - 55677501
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || ||||| |||| | ||||| |||||||||    
T  55677428 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatacaaggaccaaaagtgtaattaa 55677501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 14439894 - 14439829
Alignment:
Q  11 atttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaac 76  Q
    |||||||| ||||| ||||||||||||||||| || |||||||||| | |||||||||||||||||    
T  14439894 atttaaaaaaggtatgaccaatttcgtgagttggtcaaaatgcaaggaccaaaaatgtaattaaac 14439829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24851936 - 24852009
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||||||||| | ||||| | |||||||    
T  24851936 attttgttcgatttaaaagaggtaggatcaatttcgtgagttggtcaaaatgcaaggaccaaaagtataattaa 24852009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34807192 - 34807119
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| |||||||||||||||||  | |||||||||| | ||||| |||||||||    
T  34807192 attttgttcgatttaaaagaggtatgaccaatttcgtgagttgatcaaaatgcaaggaccaaaagtgtaattaa 34807119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41608450 - 41608374
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||||||||| |||||||||| ||||||  | |||||||||| | ||||| ||||||||||||    
T  41608450 attttgttcgatttaaaagaggtatgaccaatttcatgagttgatcaaaatgcaaggaccaaaagtgtaattaaacc 41608374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41608885 - 41608958
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| || ||||||||||||||||||||||||||||||||| || ||||||  || | ||||| |||||||||    
T  41608885 attttgttggatttaaaagaggtaggaccaatttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaa 41608958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45838623 - 45838554
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaa 70  Q
    ||||| ||||||||||||||||||||||||||| |||||||| || ||||| |||| | ||||| |||||    
T  45838623 attttgttcgatttaaaagaggtaggaccaattacgtgagttggtcaaaatacaaggaccaaaagtgtaa 45838554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 35644042 - 35644105
Alignment:
Q  11 atttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    |||||||||||||| |||| |||||||||||| || |||||||||| | ||||| |||||||||    
T  35644042 atttaaaagaggtatgacctatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 35644105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28465157 - 28465084
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||| ||||||||| |||| || |||||| ||| |  |||| |||||||||    
T  28465157 attttgttcgatttaaaagaggtaggatcaatttcgtaagttggtcaaaatggaaggactaaaagtgtaattaa 28465084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 40160561 - 40160637
Alignment:
Q  2 ttttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacca 78  Q
    |||| ||| |||| ||||||| | ||| | ||||||||||| || |||||||||| | |||||||||||||||||||    
T  40160561 ttttgttcaatttgaaagaggcatgactattttcgtgagttggtcaaaatgcaaggaccaaaaatgtaattaaacca 40160637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 6774121 - 6774074
Alignment:
Q  314 agtacgaagcatcacatgacgaattttcacgaaaccattttgacagtt 361  Q
    ||||||||  |||||||||| ||||||||| |||||||||||||||||    
T  6774121 agtacgaaaaatcacatgacaaattttcacaaaaccattttgacagtt 6774074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 21034311 - 21034225
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccattttataaa 87  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| ||||||||| ||| ||| ||||    
T  21034311 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaagccaatttttaaa 21034225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28465551 - 28465624
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  28465551 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaa 28465624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34789458 - 34789385
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  34789458 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaa 34789385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 56077794 - 56077867
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || || ||||| ||||||||||| || ||||||  || | |||||||||||||||    
T  56077794 attttgttcgatttaaaaaagataagaccattttcgtgagttggtcaaaatggtaggaccaaaaatgtaattaa 56077867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28166080 - 28166004
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || |||||   || | ||||||| ||||||||||    
T  28166080 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatagtaggaccaaaaatttaattaaacc 28166004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16578184 - 16578111
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| | |||||||||||||||    
T  16578184 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaagaaccaaaaatgtaattaa 16578111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 18050061 - 18050136
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaac 76  Q
    ||||| |||||||||||||||||| ||||||||||||||||| || |||||||||| | |||||||||||||||||    
T  18050061 attttgttcgatttaaaagaggtatgaccaatttcgtgagttggtcaaaatgcaaggaccaaaaatgtaattaaac 18050136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 599608 - 599535
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||||||||||||||| || |||||||||| | |||||||||||||||    
T  599608 attttgttcgatttaaaagaggtatgaccaatttcgtgagttggtcaaaatgcaaggaccaaaaatgtaattaa 599535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15255929 - 15255856
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  15255929 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 15255856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28254896 - 28254969
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  28254896 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 28254969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9796802 - 9796729
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||| ||||||| || |||||||||| | ||||| |||||||||    
T  9796802 attttgttcgatttaaaagaggtaggaccaattttgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 9796729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 35694348 - 35694426
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccat 79  Q
    ||||| |||||||||||| | ||||||||| ||| |||||||||| |||||| ||| | ||||| ||||||||||||||    
T  35694348 attttgttcgatttaaaaaatgtaggaccatttttgtgagttagtcaaaatggaaggaccaaaagtgtaattaaaccat 35694426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6115581 - 6115654
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||| ||||| || ||||| |||| | ||||| | |||||||    
T  6115581 attttgttcgatttaaaagaggtaggaccaatttcgcgagttggtcaaaatacaaggaccaaaagtataattaa 6115654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34799553 - 34799626
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||||||||||||| | || || |||||| ||| | ||||| |||||||||    
T  34799553 attttgttcgatttaaaagaggtaggaccaatttcgttaattggtcaaaatgaaaggaccaaaagtgtaattaa 34799626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7911086 - 7911159
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||| |||| ||||||||||| || ||||||| || |  |||| |||||||||    
T  7911086 attttgttcgatttaaaagaggtagaaccattttcgtgagttggtcaaaatgcgaggattaaaagtgtaattaa 7911159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 18428232 - 18428313
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccatttt 82  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| |||||||||||| ||||    
T  18428232 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaaaccttttt 18428313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35427282 - 35427355
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||| |||||||||||||| |||| ||||||||||| || ||||||| || | ||||| |||||||||    
T  35427282 attttgttcggtttaaaagaggtagaaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaa 35427355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35693944 - 35693871
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||||||||||||||||||||||| | || |||||| | || || |||||||||| | ||||| |||||||||    
T  35693944 attttattcgatttaaaagaggtagaatcattttcgtaaattggtcaaaatgcaaggatcaaaagtgtaattaa 35693871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42035848 - 42035775
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||| |||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  42035848 attttgttcgatttaaaagaggtagaaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaattaa 42035775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41260731 - 41260785
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaa 55  Q
    ||||| |||||||||||||||||| || ||||||||||||||  | |||||||||    
T  41260731 attttgttcgatttaaaagaggtatgatcaatttcgtgagttgatcaaaatgcaa 41260785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7910692 - 7910619
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||  |||| |||||||||||  | ||||||  || | |||||||||||||||    
T  7910692 attttgttcgatttaaaagaggtataaccattttcgtgagttgatcaaaatgtgaggaccaaaaatgtaattaa 7910619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28877359 - 28877435
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| ||| |||| |||||||||  |||| ||||||||||| || ||||||| || | ||||| ||||||||||||    
T  28877359 attttgttcaatttgaaagaggtataaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaaacc 28877435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 14340880 - 14340954
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaa 75  Q
    ||||| |||||||||||||| ||| ||||||||||||||||| || |||||||||||| ||||||||||||||||    
T  14340880 attttgttcgatttaaaagatgtatgaccaatttcgtgagttggtcaaaatgcaagtaccaaaaatgtaattaaa 14340954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 32697702 - 32697769
Alignment:
Q  7 ttcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||  | ||||| |||||||||    
T  32697702 ttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaatgaccaaaagtgtaattaa 32697769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18150194 - 18150267
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || ||||| |||| | || || |||||||||    
T  18150194 attttgttcgatttaaaagaggtaggaccaatttcgtgagtttgtcaaaatacaaggatcacaagtgtaattaa 18150267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28289760 - 28289687
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||| ||||||||||||| || |||||||||| | ||||| |||||||||    
T  28289760 attttgttcgatttaaaagaggtatgactaatttcgtgagttggtcaaaatgcaaggatcaaaagtgtaattaa 28289687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15115562 - 15115635
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  15115562 attttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgtgaggatcaaaagtgtaattaa 15115635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21371166 - 21371239
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| || |||||||||||||||||||||||||  |||||| || |||||||||| | ||||| |||||||||    
T  21371166 attttgtttgatttaaaagaggtaggaccaattttatgagttggtcaaaatgcaaggatcaaaagtgtaattaa 21371239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 38900720 - 38900648
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaatta 73  Q
    ||||| ||||||||||||||||||||| || ||||||||||| || ||||||| || | ||||| ||||||||    
T  38900720 attttgttcgatttaaaagaggtaggatcattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaatta 38900648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5162039 - 5162112
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||| ||| || |||||| || |||||||||| |  ||||||||||||||    
T  5162039 attttgttcgatttaaaagaggtatgactaatctcatgagttggtcaaaatgcaaggataaaaaatgtaattaa 5162112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4966892 - 4966818
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaa 75  Q
    ||||| |||||||||||||||| || || | ||||||||||| || ||||||| || | ||||| ||||||||||    
T  4966892 attttgttcgatttaaaagaggcagtactattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaaa 4966818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 14340474 - 14340400
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaa 75  Q
    ||||| |||||||||||| || |||||||| |||||||||||  | ||||||  || | ||||||||||||||||    
T  14340474 attttgttcgatttaaaaaagataggaccattttcgtgagttgatcaaaatggtaggaccaaaaatgtaattaaa 14340400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4967241 - 4967314
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||| ||| ||||||| || ||||||  || | ||||| |||||||||    
T  4967241 attttgttcgatttaaaagaggtaagaccatttttgtgagttggtcaaaatgtgaggaccaaaagtgtaattaa 4967314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15029779 - 15029852
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| ||||| ||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  15029779 attttgttcgatttaaaaaaggtaagaccattttcgtgagttggtcaaaatgggaggaccaaaagtgtaattaa 15029852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38901110 - 38901183
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||  |||||||||| |||||||  ||||| |||||| ||| | ||||| |||||||||    
T  38901110 attttgttcgatttaaaaagggtaggaccattttcgtgctttagtcaaaatggaaggaccaaaagtgtaattaa 38901183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7732564 - 7732491
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||  | |||||||||| | |||||||||||||||    
T  7732564 attttgttcgatttaaaagaggtaggaccaatttcgtgagttgatcaaaatgcaaggaccaaaaatgtaattaa 7732491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27245279 - 27245206
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  27245279 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 27245206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24929778 - 24929851
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| || ||||||||||||||| ||||||||||||||||| || |||||||||| | |||||||||||||||    
T  24929778 attttgtttgatttaaaagaggtaagaccaatttcgtgagttggtcaaaatgcaaggaccaaaaatgtaattaa 24929851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39388738 - 39388811
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||| ||||||||||||| || |||||||||| | ||||| |||||||||    
T  39388738 attttgttcgatttaaaagaggtaggacaaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 39388811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11973872 - 11973954
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccatttta 83  Q
    ||||| ||| ||||||||||||||| |||||||||||  ||| || |||||||||| | ||||||||||||||||| ||||||    
T  11973872 attttgttcaatttaaaagaggtagaaccaatttcgtacgttggtcaaaatgcaaggaccaaaaatgtaattaaactatttta 11973954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 26048416 - 26048494
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccat 79  Q
    ||||| || ||||||||||||||||||||||||||||||||| || |||| ||||| | ||||| ||||||||| ||||    
T  26048416 attttgtttgatttaaaagaggtaggaccaatttcgtgagttggtcaaaacgcaaggaacaaaagtgtaattaagccat 26048494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 35161272 - 35161342
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaat 71  Q
    ||||| ||||||||||||||||||||||||||| |||||||| || |||||||||| | ||||| ||||||    
T  35161272 attttgttcgatttaaaagaggtaggaccaattccgtgagttggtcaaaatgcaaggaccaaaagtgtaat 35161342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5333956 - 5333883
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||| ||||||||||| || |||||||||| | ||||| |||||||||    
T  5333956 attttgttcgatttaaaagaggtacgaccattttcgtgagttggtcaaaatgcaaggatcaaaagtgtaattaa 5333883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16081769 - 16081842
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||||||||| | ||||  |||||||||    
T  16081769 attttgttcgatttaaaagaggtaggatcaatttcgtgagttggtcaaaatgcaaggaccaaaggtgtaattaa 16081842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25637273 - 25637200
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||||||||||| |||||| || || ||||||| | ||||| |||||||||    
T  25637273 attttgttcgatttaaaagaggtaggaccaatttcatgagttggtcaatatgcaaggaccaaaagtgtaattaa 25637200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 48247663 - 48247590
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| || |||||||||||||||||||||||||||||||||  | |||||||||| | ||||| |||||||||    
T  48247663 attttgtttgatttaaaagaggtaggaccaatttcgtgagttgatcaaaatgcaaggaccaaaagtgtaattaa 48247590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 787256 - 787332
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||||||||||||||| ||||||||||| || ||||| | || | ||||| ||||||||||||    
T  787256 attttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatacgagcaccaaaagtgtaattaaacc 787332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26026393 - 26026318
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaac 76  Q
    ||||| |||||||||||||||||| ||||||||||||||| | || ||||| |||| | ||||| |||||||||||    
T  26026393 attttgttcgatttaaaagaggtatgaccaatttcgtgagctggtcaaaatacaaggaccaaaagtgtaattaaac 26026318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 28687969 - 28688043
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaac 76  Q
    ||||| |||||||||||||||||| || |||||||||||||| || |||||||||| | | |||||||||||||||    
T  28687969 attttgttcgatttaaaagaggtatgatcaatttcgtgagttggtcaaaatgcaagga-ccaaaatgtaattaaac 28688043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9181882 - 9181955
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| || ||||||||||| || || |||||||||| | ||||| |||||||||    
T  9181882 attttgttcgatttaaaagaggtatgatcaatttcgtgaattggtcaaaatgcaaggatcaaaagtgtaattaa 9181955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14311391 - 14311318
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||||||| ||||||||||||||  ||||||||  |||||| || |||||||||||| ||||||| |||||||    
T  14311391 attttattcaatttaaaagaggtataaccaattttatgagttggttaaaatgcaagtaccaaaaatataattaa 14311318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 5184484 - 5184428
Alignment:
Q  21 ggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    |||||||||||||||||||||| || ||||| |||| | ||||||||||||||||||    
T  5184484 ggtaggaccaatttcgtgagttggtcaaaatccaaggaccaaaaatgtaattaaacc 5184428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 5746112 - 5746183
Alignment:
Q  2 ttttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    |||| |||||||||||||||| || | ||||||||||||||||| |||||||||| | ||||| |||||||||    
T  5746112 ttttgttcgatttaaaagaggcag-atcaatttcgtgagttagtcaaaatgcaaggaccaaaagtgtaattaa 5746183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 786858 - 786785
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| ||||| ||||| ||||||||||| || |||||| ||| | ||||| |||||||||    
T  786858 attttgttcgatttaaaaaaggtatgaccattttcgtgagttggtcaaaatggaaggatcaaaagtgtaattaa 786785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5334289 - 5334362
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||| | ||||||||||| || ||||||  || | ||||| |||||||||    
T  5334289 attttgttcgatttaaaagaggtaggactattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaattaa 5334362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 25637668 - 25637742
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaa 75  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| ||||||||||    
T  25637668 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaaa 25637742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2758168 - 2758209
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagtt 42  Q
    ||||| ||||||||||||||||||| |||| |||||||||||    
T  2758168 attttgttcgatttaaaagaggtagaaccattttcgtgagtt 2758209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9181608 - 9181535
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  9181608 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaa 9181535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15712441 - 15712368
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  15712441 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaa 15712368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34595242 - 34595315
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||| | ||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  34595242 attttgttcgatttaaaagatgcaggaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaattaa 34595315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 49720447 - 49720374
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  49720447 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggatcaaaagtgtaattaa 49720374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 49952016 - 49952089
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||||||||||||||| || |||||||||| | |||||||||||||||    
T  49952016 attttgttcgatttaaaagaggtaagaccaatttcgtgagttggtcaaaatgcaaggaccaaaaatgtaattaa 49952089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16689434 - 16689358
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||||||||||||||||||||||||||| || ||||||| || | ||||| ||||||||||||    
T  16689434 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgctaggaccaaaactgtaattaaacc 16689358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30513798 - 30513725
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    |||||||||||||||||| || |||||||| ||||||||||| || |||||||||| | |||||||||||||||    
T  30513798 attttattcgatttaaaaaagataggaccattttcgtgagtttgtcaaaatgcaaggaccaaaaatgtaattaa 30513725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41998698 - 41998771
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||||||||||||| |||| || |||||||||| | ||||| |||||||||    
T  41998698 attttgttcgatttaaaagaggtaggaccaatttcgtaagttggtcaaaatgcaaggaccaaaagtgtaattaa 41998771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 46013498 - 46013425
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  46013498 attttgttcgatttaaaagaggtatgaccaatttcgtgagttggtcaaaatgcaaggatcaaaagtgtaattaa 46013425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 51828033 - 51827960
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||| |||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  51828033 attttgttcgatttaaaagagctaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 51827960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14654659 - 14654732
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||  ||||||||||||||| || |||||||||| | ||||| |||||||||    
T  14654659 attttgttcgatttaaaagaggtagagccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 14654732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39010151 - 39010078
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| || |||||| ||||||| || |||||||||| | |||||||||||||||    
T  39010151 attttgttcgatttaaaagaggtatgagcaattttgtgagttggtcaaaatgcaaggaccaaaaatgtaattaa 39010078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32730465 - 32730389
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| ||| |||||||||||||||||||||||||  ||||| || |||||||||| | ||||| ||||||||||||    
T  32730465 attttgttcaatttaaaagaggtaggaccaatttcaagagttggtcaaaatgcaaggaccaaaagtgtaattaaacc 32730389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 40275169 - 40275089
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccattt 81  Q
    ||||| |||||||||||||||||||||||| ||||||||||| || ||||||  || | ||||| ||||||||| ||||||    
T  40275169 attttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaattaagccattt 40275089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 43678754 - 43678833
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccatt 80  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||  | |||||||||| | ||||| ||||||||| |||||    
T  43678754 attttgttcgatttaaaagaggttggaccaagttcgtgagttgatcaaaatgcaaggaccaaaagtgtaattaagccatt 43678833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 40839122 - 40839199
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacca 78  Q
    ||||| |||||||||||||||||| ||||| ||||||||||| || ||||||  || | ||||| |||||||||||||    
T  40839122 attttgttcgatttaaaagaggtaagaccattttcgtgagtttgtcaaaatgtgaggaccaaaagtgtaattaaacca 40839199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 51828615 - 51828542
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| |||||||||||| | || || |||||||||| | ||||| |||||||||    
T  51828615 attttgttcgatttaaaagaggtaagaccaatttcgtaatttggtcaaaatgcaaggaccaaaagtgtaattaa 51828542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 52237287 - 52237360
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  52237287 attttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaattaa 52237360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 52375801 - 52375874
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||| |||||||||||||||||||| ||||||||||| || ||||||| || | ||||| |||||||||    
T  52375801 attttgttcaatttaaaagaggtaggaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaa 52375874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 40838728 - 40838652
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| || ||||||||||||||| ||||| ||||||||||| || ||||||| || | ||||| ||||||||||||    
T  40838728 attttgtttgatttaaaagaggtatgaccattttcgtgagttggtcaaaatgcgaggatcaaaagtgtaattaaacc 40838652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 44676547 - 44676475
Alignment:
Q  2 ttttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    |||| |||||||||||||||||| || ||||||| |||||| || |||||||||| | ||||| |||||||||    
T  44676547 ttttgttcgatttaaaagaggtatgatcaatttcatgagtttgtcaaaatgcaaggaccaaaagtgtaattaa 44676475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 34105120 - 34105190
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaat 71  Q
    ||||| |||||||||||||||| |||||||| ||||| |||| || |||||||||| | ||||| ||||||    
T  34105120 attttgttcgatttaaaagagggaggaccaacttcgtaagttggtcaaaatgcaaggaccaaaagtgtaat 34105190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14654275 - 14654202
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  |||| ||||| |||||||||    
T  14654275 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtagtatcaaaagtgtaattaa 14654202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25534966 - 25534893
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||| |||| ||| || || ||||||| || | ||||| |||||||||    
T  25534966 attttgttcgatttaaaagaggtaggaccattttcatgaattggtcaaaatgcgaggaccaaaagtgtaattaa 25534893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 40275564 - 40275636
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||||| |||||||||||| || ||||||  || | ||||| |||||||||    
T  40275564 attttgttcgatttaaaagaggtaggacc-atttcgtgagttggtcaaaatgtgaggaccaaaagtgtaattaa 40275636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 47431772 - 47431699
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  47431772 attttgttcgatttaaaagaggtatgaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaa 47431699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 329922 - 329850
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaatta 73  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || |||||| ||| | ||||| ||||||||    
T  329922 attttgttcgatttaaaaaagttaggaccattttcgtgagttggtcaaaatggaagaaccaaaagtgtaatta 329850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 49951622 - 49951546
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| ||||||||||||    
T  49951622 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaaacc 49951546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 51473326 - 51473402
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| ||||||||||||    
T  51473326 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggatcaaaagtgtaattaaacc 51473402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 22370661 - 22370598
Alignment:
Q  12 tttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaa 75  Q
    ||||||| ||||||||||| ||||||||||| || ||||||| || | ||||| ||||||||||    
T  22370661 tttaaaaaaggtaggaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaaa 22370598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 27199777 - 27199702
Alignment:
Q  2 ttttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    |||| |||||||| ||||||| | ||||| ||||||||| | || ||||||| || | ||||||||||||||||||    
T  27199777 ttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcgaggaccaaaaatgtaattaaacc 27199702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 330306 - 330379
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| || ||||||||| ||||||||||| ||||||||||| || ||||||| || | ||||  |||||||||    
T  330306 attttgtttgatttaaaaaaggtaggaccattttcgtgagttggtcaaaatgcgaggaccaaatgtgtaattaa 330379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2044347 - 2044274
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||| |||| |||||| || ||||||| || | ||||| || ||||||    
T  2044347 attttgttcgatttaaaagaggtatgaccattttcatgagttggtcaaaatgcgagaaccaaaagtgaaattaa 2044274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2051371 - 2051298
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  2051371 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaa 2051298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38535765 - 38535818
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgca 54  Q
    ||||||||||||||||||||| | |||| |||||||| |||| || ||||||||    
T  38535765 attttattcgatttaaaagagatcggactaatttcgtaagttggtcaaaatgca 38535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 51472931 - 51472858
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| || ||||||||||||||||||  |||||| |||||| || |||||||||| | ||||| | |||||||    
T  51472931 attttgtttgatttaaaagaggtaggaaaaatttcatgagttggtcaaaatgcaaggaccaaaagtataattaa 51472858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 55389681 - 55389640
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagtt 42  Q
    ||||| |||||||||||| ||||||||||| |||||||||||    
T  55389681 attttgttcgatttaaaaaaggtaggaccattttcgtgagtt 55389640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 55390067 - 55390140
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| || ||||||||| ||||||||||| |||||||| || || ||||||| || | ||||| |||||||||    
T  55390067 attttgtttgatttaaaaaaggtaggaccattttcgtgaattggttaaaatgcgaggaccaaaagtgtaattaa 55390140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44676942 - 44677018
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||| || || ||||| ||||||||||| || ||||||  || | ||||| ||||||||||||    
T  44676942 attttgttcgatttaaaaaagatatgaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaaacc 44677018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 38008026 - 38007953
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  38008026 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 38007953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 15550749 - 15550673
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||||||||||||||||||||||||||| || | |||||||| | ||||| ||||||||||||    
T  15550749 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcagaatgcaaggatcaaaagtgtaattaaacc 15550673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 33920688 - 33920606
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccattttat 84  Q
    ||||| |||||||||||||||||| || |||||||||||||| || |||||||||| | ||||||||||||| |||||||||||    
T  33920688 attttgttcgatttaaaagaggtatgatcaatttcgtgagttggtcaaaatgcaaggaccaaaaatgtaatt-aaccattttat 33920606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4808955 - 4808882
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||||||||| |  ||||||||||||||    
T  4808955 attttgttcgatttaaaagaggtaggatcaatttcgtgagttggtcaaaatgcaagaactaaaaatgtaattaa 4808882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20128207 - 20128280
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| || ||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  20128207 attttgtttgatttaaaagaggtaggaccaatttcgtgagttggtaaaaatgcaaggaccaaaagtgtaattaa 20128280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 25336070 - 25336143
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||| ||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  25336070 attttgttcgatttaaaagaagtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 25336143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43160085 - 43160012
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| |||||||||||||||||  | |||||||||| | |||||||||||||||    
T  43160085 attttgttcgatttaaaagaggtatgaccaatttcgtgagttgatcaaaatgcaaggaccaaaaatgtaattaa 43160012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 16953405 - 16953477
Alignment:
Q  2 ttttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    |||| ||||||||||||||||||||||||||||| |||||| || |||||||||| | ||||| |||||||||    
T  16953405 ttttgttcgatttaaaagaggtaggaccaatttcatgagttggtcaaaatgcaaggaccaaaagtgtaattaa 16953477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9330265 - 9330340
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaac 76  Q
    ||||| |||||||||||||||||| ||| ||||||||||||| || |||||||||| | ||||| |||||||||||    
T  9330265 attttgttcgatttaaaagaggtatgacaaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaaac 9330340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 5561018 - 5561084
Alignment:
Q  9 cgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaa 75  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||| | |||||  |||||||||    
T  5561018 cgatttaaaagaggtaggatcaatttcgtgagttagttaaaatgcaaggaccaaaagggtaattaaa 5561084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 649603 - 649530
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||||||||||||| |||| || || ||||||| | ||||| |||||||||    
T  649603 attttgttcgatttaaaagaggtaggaccaatttcgtaagttggtcaagatgcaaggaccaaaagtgtaattaa 649530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4355831 - 4355758
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||||||||||||||  || |||||||||| | ||||| |||||||||    
T  4355831 attttgttcgatttaaaagaggtatgaccaatttcgtgagtaggtcaaaatgcaaggaccaaaagtgtaattaa 4355758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6949914 - 6949987
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||| |||||||||| ||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  6949914 attttgttctatttaaaagatgtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 6949987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42192713 - 42192786
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||| ||||||||||| || ||||||| || | ||||| |||||||||    
T  42192713 attttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaa 42192786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 43216179 - 43216252
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||| ||||| |  |||| |||||||||    
T  43216179 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaacgcaaggactaaaagtgtaattaa 43216252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 16175820 - 16175892
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaatta 73  Q
    ||||| |||||||||||||||||| ||||||||||||||||| || |||||| ||| | ||||| ||||||||    
T  16175820 attttgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggaccaaaagtgtaatta 16175892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6949527 - 6949454
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| |||||||||||||| ||||||  || | |||||||||||||||    
T  6949527 attttgttcgatttaaaaaagataggaccattttcgtgagttagtcaaaatgataggaccaaaaatgtaattaa 6949454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42192316 - 42192243
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  42192316 attttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaattaa 42192243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11540108 - 11540160
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgc 53  Q
    ||||| |||||||||||||||||||||||| ||||||||||| || |||||||    
T  11540108 attttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgc 11540160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 32418220 - 32418162
Alignment:
Q  16 aaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||||||||||||||||||||||||| || |||||||||| | || || |||||||||    
T  32418220 aaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccataagtgtaattaa 32418162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 63434 - 63510
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| || |||||||||||| || ||||| ||||||||||| || ||||| |||| | ||||||| ||||||||||    
T  63434 attttgtttgatttaaaagagataagaccattttcgtgagttggtcaaaatacaaggaccaaaaatataattaaacc 63510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 63033 - 62960
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||| ||| ||||||||||| ||||||||||| || |||||| ||| | || || |||||||||    
T  63033 attttgttcgattttaaaaaggtaggaccattttcgtgagttggtcaaaatggaaggaccataagtgtaattaa 62960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24140144 - 24140217
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| || ||||||||| ||||||||||| ||||||||||| || || |||| || | ||||| |||||||||    
T  24140144 attttgtttgatttaaaaaaggtaggaccattttcgtgagttggtcaagatgcgaggaacaaaagtgtaattaa 24140217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33921082 - 33921155
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  33921082 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaa 33921155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38008421 - 38008494
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| ||||||||||| || ||||||  || | ||||| |||||||||    
T  38008421 attttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggaccaaaagtgtaattaa 38008494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29439006 - 29438933
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  29439006 attttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 29438933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10278624 - 10278551
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||||||||| | ||||| |||||||||    
T  10278624 attttgttcgatttaaaagaggtaggatcaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 10278551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16298758 - 16298685
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||||||||||||||| || ||||||||||   |||||||||||||||    
T  16298758 attttgttcgatttaaaagaggtatgaccaatttcgtgagttggtcaaaatgcaagggccaaaaatgtaattaa 16298685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34555455 - 34555382
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||| |||||||||| | ||||| |||||||||    
T  34555455 attttgttcgatttaaaagaggtagcaccaatttcgcgagttagtcaaaatgcaaggaccaaaagtgtaattaa 34555382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30786848 - 30786774
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaa-tttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||| | ||||| |||||||||    
T  30786848 attttgttcgatttaaaagaggtaggaccaattttcgtgagttggtcaaaatgcaagaaccaaaagtgtaattaa 30786774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23340259 - 23340186
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||| |||||||||||||||||||| || |||||||||  | ||||| |||||||||    
T  23340259 attttgttcgatttaaaagagataggaccaatttcgtgagttggtcaaaatgcaatgatcaaaagtgtaattaa 23340186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 44582133 - 44582060
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||||||||||||||| |||| || |||||| ||| | ||||| |||||||||    
T  44582133 attttgttcgatttaaaagaggtaggaccaatttcgttagttggtcaaaatgtaaggaccaaaagtgtaattaa 44582060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 37421236 - 37421160
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||||||||| |||||||||||||| || || |||||||||  | ||||| ||||||||||||    
T  37421236 attttgttcgatttaaaagaggtaagaccaatttcgtgaattggtcaaaatgcaaagaccaaaagtgtaattaaacc 37421160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39485141 - 39485065
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||| ||||||||||||||| ||||||||| |||| ||||||| || | ||||| ||||||||||||    
T  39485141 attttgttcgatttgaaagaggtaggaccattttcgtgagctagtcaaaatgcgaggaccaaaagtgtaattaaacc 39485065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17641839 - 17641913
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaa 75  Q
    ||||| |||||||||||||||||| ||||| ||||||||||| || ||||||| || | ||||| ||||||||||    
T  17641839 attttgttcgatttaaaagaggtatgaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaaa 17641913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 50304515 - 50304442
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||||| ||||||||||| || ||||||| || | ||||| |||||||||    
T  50304515 attttgttcgatttaaaagaggtatgaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaa 50304442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 52335980 - 52336031
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatg 52  Q
    ||||| ||||||||||||||||||||||||||||| |||||| || ||||||    
T  52335980 attttgttcgatttaaaagaggtaggaccaatttcatgagttggtcaaaatg 52336031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 444021 - 444075
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaa 55  Q
    ||||| |||||||||||||||||| ||| ||||||||||||| || |||||||||    
T  444021 attttgttcgatttaaaagaggtatgacaaatttcgtgagttggtcaaaatgcaa 444075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 45048231 - 45048157
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaa 75  Q
    ||||| ||| ||||||||||||||| |||| |||||| |||| || |||||||||| | ||||| ||||||||||    
T  45048231 attttgttcaatttaaaagaggtagaaccattttcgtaagttggtcaaaatgcaaggaccaaaagtgtaattaaa 45048157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 1837581 - 1837508
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||| || || ||||||||||||||  | |||||||||| | ||||| |||||||||    
T  1837581 attttgttcgatttaaaagagatatgatcaatttcgtgagttgatcaaaatgcaaggaccaaaagtgtaattaa 1837508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2868178 - 2868251
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||||| ||||||| ||| || ||||||  || | ||||| |||||||||    
T  2868178 attttgttcgatttaaaagaggtaggaccattttcgtgtgttggtcaaaatgtgaggatcaaaagtgtaattaa 2868251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9992625 - 9992698
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| |||| |||||| || |||||||||| | ||||| |||||||||    
T  9992625 attttgttcgatttaaaaaagataggaccattttcatgagtttgtcaaaatgcaaggaccaaaagtgtaattaa 9992698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8230111 - 8230187
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| ||||||||||||||||||  |||| |||||||| |  || ||||||| || | ||||||||||||||||||    
T  8230111 attttgttcgatttaaaagaggtataaccattttcgtgaataggtcaaaatgcgagaaccaaaaatgtaattaaacc 8230187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4080097 - 4080026
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaatt 72  Q
    ||||| |||||||||||| ||||| || |||||||||||||| || || ||||||| | ||||| |||||||    
T  4080097 attttgttcgatttaaaataggtacgatcaatttcgtgagttggtcaagatgcaaggaccaaaagtgtaatt 4080026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 50305255 - 50305332
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacca 78  Q
    ||||| |||||||||||| || |||||||| |||| |||||| || ||||||  || | ||||| |||||||||||||    
T  50305255 attttgttcgatttaaaaaagataggaccattttcatgagttggttaaaatggtagaaccaaaagtgtaattaaacca 50305332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 31073612 - 31073690
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccat 79  Q
    ||||| |||||||||||||||||| ||||||||||||||| | || |||||||||| | ||||| ||||||||| ||||    
T  31073612 attttgttcgatttaaaagaggtatgaccaatttcgtgagctggtcaaaatgcaaggaccaaaagtgtaattaagccat 31073690  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5120939 - 5121012
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||||||  ||||||||||||| || |||||||||| | ||||| |||||||||    
T  5120939 attttgttcgatttaaaagaggtaggaataatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 5121012  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31574195 - 31574268
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||||||||| ||| ||||||||||||| || |||||||||| | ||||| |||||||||    
T  31574195 attttgttcgatttaaaagaggtatgactaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaattaa 31574268  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25468925 - 25468849
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| ||||||||||||||| || ||||||||||||||||| || |||||| ||| | ||||| ||||||||||||    
T  25468925 attttgttcgatttaaaagagatatgaccaatttcgtgagttggtcaaaatgtaaggaccaaaagtgtaattaaacc 25468849  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28636368 - 28636286
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaaccatttta 83  Q
    ||||| |||||||||||||| ||| ||||||||||||||||| || ||||| |||  | ||||||||||||||| ||| ||||    
T  28636368 attttgttcgatttaaaagaagtaagaccaatttcgtgagttggtcaaaatacaatgaccaaaaatgtaattaagccaattta 28636286  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 29891155 - 29891083
Alignment:
Q  2 ttttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    |||| |||| ||||||||||||| || ||||||||| ||||||| |||||| ||| | ||||| |||||||||    
T  29891155 ttttgttcggtttaaaagaggtatgatcaatttcgtaagttagtcaaaatgtaaggaacaaaagtgtaattaa 29891083  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 30250775 - 30250724
Alignment:
Q  23 taggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    |||||||||||||||||||| || |||||||||| | ||||| |||||||||    
T  30250775 taggaccaatttcgtgagttggtcaaaatgcaaggaccaaaattgtaattaa 30250724  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5114544 - 5114471
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| |||||||||||| || |||||||| |||||||||||  | ||||||  || | |||||||||||||||    
T  5114544 attttgttcgatttaaaaaagataggaccattttcgtgagttgatcaaaatggtaggatcaaaaatgtaattaa 5114471  T

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Target: scaffold0712 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6866 - 6942
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||||| ||| |||||||||||| | || || |||||||||| | |||||  |||||||||||    
T  6866 attttgttcgatttaaaagatgtaagaccaatttcgtaaattggtcaaaatgcaaggaccaaaagagtaattaaacc 6942  T

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Target: scaffold0709 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6884 - 6960
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaaacc 77  Q
    ||||| |||||||||||||| ||| |||||||||||| | || || |||||||||| | |||||  |||||||||||    
T  6884 attttgttcgatttaaaagatgtaagaccaatttcgtaaattggtcaaaatgcaaggaccaaaagagtaattaaacc 6960  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 46342 - 46269
Alignment:
Q  1 attttattcgatttaaaagaggtaggaccaatttcgtgagttagtgaaaatgcaagtagcaaaaatgtaattaa 74  Q
    ||||| ||||||||||||||||||| |||| |||||| |||| || ||||||| || | ||||| || ||||||    
T  46342 attttgttcgatttaaaagaggtagaaccattttcgtaagttggtcaaaatgcgaggaccaaaagtgcaattaa 46269  T

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