View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5981_high_2 (Length: 420)
Name: NF5981_high_2
Description: NF5981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5981_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 9473175 - 9473556
Alignment:
| Q |
19 |
gtatggagatacccattcatgctctcacgtcacatgcaggtaaagtgagaaccagaattttggaaggaactaacattgttcaatgattctgccttgttga |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9473175 |
gtatggagatacctattcatgctctcacgtcacatgcaggtaaagtgagaaccagaattttggaaggaactaacattgttcaatgattctggcttgttga |
9473274 |
T |
|
| Q |
119 |
atgaacctcaacataccaggattttcgacaatcttcggttcctctggagctgccaaccatgctgattatgtttgaaaaaattcgcggataaccttacgta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
9473275 |
atgaacctcaacataccaggattttcgacaatcttcggttcccctggagctgccaaccatgctgattatgtttgaaaaaagtcgtggatatccttacgta |
9473374 |
T |
|
| Q |
219 |
tgaaaaacttctaataatcttttactgaaaccatcatggccataacaatcaacatcgtaggcatatgtttcatttgtgtattcgaggtacaaaacgtcgt |
318 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |||||||||| | ||| |
|
|
| T |
9473375 |
ggaaaaacttctagtaatctttttctaaaaccatcatggccataacaatcaacttcataggcatatgtttcatttgcgtattctaggtacaaaatgccgt |
9473474 |
T |
|
| Q |
319 |
tttctcagtcctccatttccttgatgcgaagtatttttcagttcgtcaactgatcccgattcaacttccttcattttctcctttg |
403 |
Q |
| |
|
||||||||||||||||||||| ||| || ||| ||||| ||||| | |||||| |||||||||||||||||||||||||||| |
|
|
| T |
9473475 |
tttctcagtcctccatttcctcgatacgtagtgttttttagttc---acttgatcctgattcaacttccttcattttctcctttg |
9473556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 9492743 - 9492848
Alignment:
| Q |
74 |
aattttggaaggaactaacattgttcaatgattctgccttgttgaatgaacctcaacataccaggattttcgacaatcttcggttcctctggagctgcca |
173 |
Q |
| |
|
|||||||||| ||||||| | || | ||||||||| | |||| |||||||||||||||||| | ||| ||||| |||||||||| |||| ||||||| |
|
|
| T |
9492743 |
aattttggaaagaactaaaactgataaatgattctagcctgtttgatgaacctcaacataccaaaacttttgacaaccttcggttcccctggtgctgcca |
9492842 |
T |
|
| Q |
174 |
accatg |
179 |
Q |
| |
|
|||||| |
|
|
| T |
9492843 |
accatg |
9492848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University