View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5981_high_7 (Length: 242)

Name: NF5981_high_7
Description: NF5981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5981_high_7
NF5981_high_7
[»] chr8 (7 HSPs)
chr8 (1-234)||(5886869-5887102)
chr8 (1-81)||(5849281-5849361)
chr8 (1-81)||(5842571-5842651)
chr8 (5-81)||(5920651-5920727)
chr8 (5-81)||(5948222-5948298)
chr8 (5-81)||(5983835-5983911)
chr8 (7-81)||(5959319-5959393)
[»] chr2 (1 HSPs)
chr2 (1-56)||(42788756-42788811)
[»] chr3 (1 HSPs)
chr3 (4-50)||(34626445-34626491)
[»] chr1 (1 HSPs)
chr1 (4-50)||(51044689-51044735)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 5886869 - 5887102
Alignment:
Q  1 atgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaagtccaaacagttcaaatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5886869 atgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtccaaagtccaaacagttcaaatct 5886968  T
Q  101 tgttgagggaaaaataagtagaccgtcccttcccttttaaaataagtgtcattttatcattaaatttaaagggaaaaatttaagatccaattgaaaaaga 200  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886969 tgttgagggaaaaatgagtagaccgtcccttccgttttaaaataagtgtcattttatcattaaatttaaagggaaaaatttaagatccaattgaaaaaga 5887068  T
Q  201 gagacacttatttgaaaccggaaagagtataatc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  5887069 gagacacttatttgaaaccggaaagagtataatc 5887102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5849281 - 5849361
Alignment:
Q  1 atgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||    
T  5849281 atgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtgcttggtaatttgtgcccatctgtccaaa 5849361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5842571 - 5842651
Alignment:
Q  1 atgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 81  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||| ||||    
T  5842571 atgcttgaattccaaaagtttttcacctcattatcggttcttcctggcaagtacttggcaatttgtgcccatctgtccaaa 5842651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 5920651 - 5920727
Alignment:
Q  5 ttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 81  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||| |||| ||||    
T  5920651 ttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttcgcaatctgagcccacctgtccaaa 5920727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 5948222 - 5948298
Alignment:
Q  5 ttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 81  Q
    ||||||||||||||||||| | ||||||||| |||||||| ||||||||||| |||||||| |||||||||| ||||    
T  5948222 ttgaattccaaaagttttttatctcattatctgttcttccaggtaagtgctttgcaatttgagcccatctgtccaaa 5948298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 5983835 - 5983911
Alignment:
Q  5 ttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 81  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| || |||||||||| ||||    
T  5983835 ttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgttttgcaatctgagcccatctgtccaaa 5983911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 5959319 - 5959393
Alignment:
Q  7 gaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatctgtgcaaa 81  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||| || ||||| || |||||||||| ||||    
T  5959319 gaattccaaaagtttttcacctcattatctgttcttccagttaagtgttttgcaatctgagcccatctgtccaaa 5959393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42788756 - 42788811
Alignment:
Q  1 atgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgctt 56  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  42788756 atgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctt 42788811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 34626445 - 34626491
Alignment:
Q  4 cttgaattccaaaagtttttcacctcattatccgttcttcctggtaa 50  Q
    |||||||||||||||||||| | ||||||||||||||| ||||||||    
T  34626445 cttgaattccaaaagtttttaatctcattatccgttctacctggtaa 34626491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 51044735 - 51044689
Alignment:
Q  4 cttgaattccaaaagtttttcacctcattatccgttcttcctggtaa 50  Q
    |||||||||||||||||||| | ||||||||| ||||| ||||||||    
T  51044735 cttgaattccaaaagttttttatctcattatctgttctccctggtaa 51044689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University