View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5981_low_3 (Length: 380)
Name: NF5981_low_3
Description: NF5981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5981_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 10751471 - 10751820
Alignment:
| Q |
8 |
gagcagagattgaacacaaatcagatatgcagtagcaagaaagagatagtggaaagagttagaaacagtataattggtttgnnnnnnncaccgattgcca |
107 |
Q |
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| T |
10751471 |
gagcagagattgaacacaaatcagatatgcagtagcaagaaagagatagtggaaagagttagaaacagtataattggtttgaaaaaaacaccgattgccg |
10751570 |
T |
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| Q |
108 |
tttatcttgcagtagccgataaactccttaacaattcttccataatggaagactggggagaagggtttcttcctttcgagaaaaagaaactcggcgttga |
207 |
Q |
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| T |
10751571 |
tttatcttgcagtagccgataaactccttaacaattcttccataatggaagactggggagaagggtttcttcctttcgagaaaaagaaactcggcgttga |
10751670 |
T |
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| Q |
208 |
aggaatttatagcaagtatccatatctaattcagtctgcaattgactatgaagtttgtttacaagccgatatctttgttggaaacagtttctccacattt |
307 |
Q |
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| T |
10751671 |
aggaatttatagcaagtatccatatctaattcagtctgcaattgactatgaagtttgtttacaagccgatatctttgttggaaacagtttctccacattt |
10751770 |
T |
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| Q |
308 |
tcaagtcttatagttcttgaaagaacacagaagatgatcggaatgagtgt |
357 |
Q |
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| T |
10751771 |
tcaagtcttatagttcttgaaagaacacagaagatgatcggaatgagtgt |
10751820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 108 - 346
Target Start/End: Original strand, 32561018 - 32561256
Alignment:
| Q |
108 |
tttatcttgcagtagccgataaactccttaacaattcttccataatggaagactggggagaagggtttcttcctttcgagaaaaagaaactcggcgttga |
207 |
Q |
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| T |
32561018 |
tttatcttgcagtagctgataaactacttcaaaattcttcaatattggaaggttggaaggaagggtttctaccttttgagaagaagaaacttggtgttga |
32561117 |
T |
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| Q |
208 |
aggaatttatagcaagtatccatatctaattcagtctgcaattgactatgaagtttgtttacaagccgatatctttgttggaaacagtttctccacattt |
307 |
Q |
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||| ||| || ||||| ||| ||||||||||||||||||| |||||||| ||||| ||| |||||||||||||| ||||||||||| |||||| |
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| T |
32561118 |
taaaatatatgcaaaatatccttatttaattcagtctgcaattgattatgaagtctgtttgagagctgatatctttgttggtaacagtttctctacattt |
32561217 |
T |
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| Q |
308 |
tcaagtcttatagttcttgaaagaacacagaagatgatc |
346 |
Q |
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| T |
32561218 |
tcaagtcttatagttcttgaaagaacacaaaagatgatc |
32561256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 32560920 - 32560979
Alignment:
| Q |
7 |
ggagcagagattgaacacaaatcagatatgcagtagcaagaaagagatagtggaaagagt |
66 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||| |
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| T |
32560920 |
ggagcaaagattgaacacaaatcagatatgtagtagcaagaatgagataatggaaagagt |
32560979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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