View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5981_low_5 (Length: 311)
Name: NF5981_low_5
Description: NF5981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5981_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 22 - 303
Target Start/End: Complemental strand, 30727637 - 30727353
Alignment:
| Q |
22 |
acatttctctatatcaaatttagtacattcattttgagtttttgcattgttatttattaggtttaaaattggcaagcaagcat-atgagaggaaagaaga |
120 |
Q |
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| T |
30727637 |
acatttctctatatcaaatttagtacattcattttgagtttttgcattgttatttattaggtttaaaattggcaagcaagcatgatgagaggaaagaaga |
30727538 |
T |
|
| Q |
121 |
gtaaatacgttttctacgtactataattttaaaatagttactgtggtggaacagaaatgctatacacttgtttttggtacaatagaaatgagttaaatta |
220 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
30727537 |
gtaaatacgttttctacatactataattataaaatagttactgtggtggaacagaaatgctatacacttgtttttggtacaatggaaatgtgttaaatta |
30727438 |
T |
|
| Q |
221 |
tggcacacactttaggtacatactaaatagttgaagttaagttacactacc--acagtagtaacagactaacagtattatctacc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
30727437 |
tggcacacactttaggtacatactaaatagttgaagttaagttacactaccagacagtagtaacagactaacagtattatatacc |
30727353 |
T |
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