View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5981_low_6 (Length: 255)
Name: NF5981_low_6
Description: NF5981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5981_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5886510 - 5886272
Alignment:
| Q |
1 |
gaaaatcaaatttcaaaaagtggcacctcaatcaaccaaagttcattaatgcaacaatatgatcaatatcatgatgatcataatttggttaaacttgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5886510 |
gaaaatcaaatttcaaaaagtggcacctcaatcaaccaaagttcattaatgcaacaatatgatcaatatcatgatgatcataatttggttaaacttgaag |
5886411 |
T |
|
| Q |
101 |
cccttgtgcctaaattagtcaatgatcaaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatgtgatcctaaactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5886410 |
cccttgtgcctaaattagtcaatgatcaaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatgtgatcctaaactc |
5886311 |
T |
|
| Q |
201 |
ctatcatcatcatcatcaagatcaattttaccttccaac |
239 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| |
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| T |
5886310 |
ctatcatcatcatcatcaagatcagttttaccttccaac |
5886272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 5842158 - 5841953
Alignment:
| Q |
28 |
tcaatcaaccaaagttcattaatgcaacaatatgatcaatatcatgatgatcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatc |
127 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||| ||||||| |||||||||||||| ||||||||| |
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| T |
5842158 |
tcaatcaaccaaagttcattaatgcagcaatatgatcaatatcatgat---cataacttggttgaacatgaagccattgtgcctaaattactcaatgatc |
5842062 |
T |
|
| Q |
128 |
aaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatgtgatcctaaactcctatcatcatcatcatcaagatcaatt |
227 |
Q |
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| T |
5842061 |
aaagccttgaaaattatgcatgtagcatcctagattattcatctgattccaaggaacaaatgatcctaaactccaatcatcatc---atcaagatcagtt |
5841965 |
T |
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| Q |
228 |
ttaccttccaac |
239 |
Q |
| |
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||||||||||| |
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| T |
5841964 |
ctaccttccaac |
5841953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 5848868 - 5848663
Alignment:
| Q |
28 |
tcaatcaaccaaagttcattaatgcaacaatatgatcaatatcatgatgatcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatc |
127 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||| ||||||| |||||||||||||| ||||||||| |
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| T |
5848868 |
tcaatcaaccaaagttcattaatgcagcaatatgatcaatatcatgat---cataacttggttgaacatgaagccattgtgcctaaattactcaatgatc |
5848772 |
T |
|
| Q |
128 |
aaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatgtgatcctaaactcctatcatcatcatcatcaagatcaatt |
227 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| || |
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| T |
5848771 |
aaagccttgaaaattatgcatgtagcatcctagattattcatctgattccaaggaacaaatgatcctaaactccaatcatcatc---atcaagatcagtt |
5848675 |
T |
|
| Q |
228 |
ttaccttccaac |
239 |
Q |
| |
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||||||||||| |
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| T |
5848674 |
ctaccttccaac |
5848663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 5983425 - 5983316
Alignment:
| Q |
45 |
attaatgcaacaatatgatcaatatcatgatgatcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatcaaagccttgaggattat |
144 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||| || | ||||| ||||||||||| |||||||||||||||||||| |
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| T |
5983425 |
attaatgcaacaatatgatcaatatcatgat---------ttggttgaacttgatgctactatgcctgaattagtcaatcatcaaagccttgaggattat |
5983335 |
T |
|
| Q |
145 |
gcttgtagcatcctagatt |
163 |
Q |
| |
|
||||||| ||||||||||| |
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| T |
5983334 |
gcttgtaacatcctagatt |
5983316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 5920196 - 5920127
Alignment:
| Q |
78 |
tcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatcaaagccttgaggattatgct |
147 |
Q |
| |
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|||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5920196 |
tcatgatttggttgaacttgaagccactctgcctaaattagtcaatgatcaaagccttgaggattatgct |
5920127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 5958883 - 5958774
Alignment:
| Q |
45 |
attaatgcaacaatatgatcaatatcatgatgatcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatcaaagccttgaggattat |
144 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||| |||||| ||| |||||||||||||||||||| |
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| T |
5958883 |
attaatgcaacaatatgatcaatatcatgat---------ttggttgaacttgatgaaactgtgcctgaattagaaaatcatcaaagccttgaggattat |
5958793 |
T |
|
| Q |
145 |
gcttgtagcatcctagatt |
163 |
Q |
| |
|
||||||||||||||||||| |
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| T |
5958792 |
gcttgtagcatcctagatt |
5958774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 5885984 - 5885904
Alignment:
| Q |
104 |
ttgtgcctaaattagtcaatgatcaaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| | ||||||||||||||||| |||||| |
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| T |
5885984 |
ttgtgcctaaattagtcaatgatcaaagccttgaggaacatgattgttgcatcctgg---attcatctgattccaagaaacatg |
5885904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 5841662 - 5841585
Alignment:
| Q |
107 |
tgcctaaattagtcaatgatcaaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatg |
187 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| |||| ||||||||| |||||| ||||||||||||||||| |
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| T |
5841662 |
tgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgcatcctag---attcatttgattccaaggaacatg |
5841585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 5847816 - 5847739
Alignment:
| Q |
107 |
tgcctaaattagtcaatgatcaaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatg |
187 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| |||| ||||||||| |||||| ||||||||||||||||| |
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|
| T |
5847816 |
tgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgcatcctag---attcatttgattccaaggaacatg |
5847739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 5848372 - 5848295
Alignment:
| Q |
107 |
tgcctaaattagtcaatgatcaaagccttgaggattatgcttgtagcatcctagattattcatctgattccaaggaacatg |
187 |
Q |
| |
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||||| |||||||||||||||||||||||||||| ||| |||| ||||||||| |||||| ||||||||||||||||| |
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| T |
5848372 |
tgcctcaattagtcaatgatcaaagccttgaggaccatgattgttgcatcctag---attcatttgattccaaggaacatg |
5848295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 5947792 - 5947706
Alignment:
| Q |
77 |
atcataatttggttaaacttgaagcccttgtgcctaaattagtcaatgatcaaagccttgaggattatgcttgtagcatcctagatt |
163 |
Q |
| |
|
||||| |||||||| ||||||| || ||||||| |||||| |||| ||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
5947792 |
atcatgatttggttgaacttgatgctactgtgcctgaattagccaatcatcaaagccttgaggattacgcttctagcatcctagatt |
5947706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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