View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5982_low_1 (Length: 387)

Name: NF5982_low_1
Description: NF5982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5982_low_1
NF5982_low_1
[»] chr6 (19 HSPs)
chr6 (158-364)||(26059545-26059744)
chr6 (158-364)||(26079515-26079714)
chr6 (166-372)||(26146498-26146698)
chr6 (158-372)||(25486900-25487095)
chr6 (166-277)||(25514427-25514538)
chr6 (166-291)||(25986741-25986855)
chr6 (183-305)||(25077802-25077925)
chr6 (215-323)||(27661928-27662036)
chr6 (210-311)||(27079030-27079131)
chr6 (240-314)||(27423901-27423975)
chr6 (26-92)||(27661450-27661516)
chr6 (216-280)||(27715028-27715092)
chr6 (160-209)||(27661858-27661907)
chr6 (158-206)||(27703195-27703243)
chr6 (207-256)||(26852408-26852457)
chr6 (158-206)||(26852473-26852521)
chr6 (272-314)||(27703284-27703326)
chr6 (168-209)||(27079147-27079188)
chr6 (216-272)||(31288184-31288240)
[»] scaffold0003 (1 HSPs)
scaffold0003 (240-314)||(63388-63462)
[»] scaffold0349 (1 HSPs)
scaffold0349 (216-280)||(16852-16916)
[»] chr8 (1 HSPs)
chr8 (253-311)||(29270329-29270387)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 158 - 364
Target Start/End: Complemental strand, 26059744 - 26059545
Alignment:
Q  158 agaaacattgaatttgtaactgactatatacagaaattaatcaacatttatataaagtgtaaacaacaaaggacaaacctgcaatgttgagattgagaga 257  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  26059744 agaaacattgaatttgtaactgactacatacagaaattaatcaacatttatacaaagtataaacatcaaagcacaaacctgcaatgttgagattgagaga 26059645  T
Q  258 ataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcatcttgtactcttctgcttaatatttcaat 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |    |||||||||||||||||    
T  26059644 ataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccac----atctttctttcatcttgtgc---actgcttaatatttcaat 26059552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 158 - 364
Target Start/End: Complemental strand, 26079714 - 26079515
Alignment:
Q  158 agaaacattgaatttgtaactgactatatacagaaattaatcaacatttatataaagtgtaaacaacaaaggacaaacctgcaatgttgagattgagaga 257  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  26079714 agaaacattgaatttgtaactgactacatacagaaattaatcaacatttatacaaagtataaacatcaaagcacaaacctgcaatgttgagattgagaga 26079615  T
Q  258 ataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcatcttgtactcttctgcttaatatttcaat 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |    |||||||||||||||||    
T  26079614 ataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccac----atctttctttcatcttgtgc---actgcttaatatttcaat 26079522  T

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Target: chr6; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 166 - 372
Target Start/End: Complemental strand, 26146698 - 26146498
Alignment:
Q  166 tgaatttgtaactgactatatacagaaattaatcaacatttatataaagtgtaaacaacaaaggacaaacctgcaatgttgagattgagagaataacaag 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  26146698 tgaatttgtaactgactatatacagaaattaatcaacatttatacaaagtatatacaacaaagcacaaacctgcaatgttgagattgagagaataacaag 26146599  T
Q  266 aagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcatcttgtactcttctgcttaatatttcaatctcat-cc 364  Q
    ||||||||||||||||||||||||||| ||  |||||||||||| ||    |||||||||||||||||  |    |||||||||||||||||||||| ||    
T  26146598 aagacggttaactttatgatggacctagactaaggaatgtacccaac----atctttctttcatcttgcgc---actgcttaatatttcaatctcatccc 26146506  T
Q  365 tcctcctc 372  Q
    ||||||||    
T  26146505 tcctcctc 26146498  T

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Target: chr6; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 158 - 372
Target Start/End: Complemental strand, 25487095 - 25486900
Alignment:
Q  158 agaaacattgaatttgtaactgactatatacagaaattaatcaacatttatataaagtgtaaacaacaaaggacaaacctgcaatgttgagattgagaga 257  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||           |||||||| ||||||||||||||||||||||||||||    
T  25487095 agaaacattgaatttgtaactgactatatacagaaatt--tcaacatttata-----------caacaaagcacaaacctgcaatgttgagattgagaga 25487009  T
Q  258 ataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcatcttgtactcttctgcttaatatttcaat 357  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||||||||| ||    |||||||||||||||||  |    |||||||||||||||||    
T  25487008 ataacaagaagacggttaactttatgatggacctagactaaggaatgtacccaac----atctttctttcatcttgcgc---actgcttaatatttcaat 25486916  T

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Target: chr6; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 166 - 277
Target Start/End: Complemental strand, 25514538 - 25514427
Alignment:
Q  166 tgaatttgtaactgactatatacagaaattaatcaacatttatataaagtgtaaacaacaaaggacaaacctgcaatgttgagattgagagaataacaag 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  25514538 tgaatttgtaactgactatatacagaaattaatcaacatttatacaaagtatatacaacaaagcacaaacctgcaatgttgagattgagagaataacaag 25514439  T
Q  266 aagacggttaac 277  Q
    ||||||||||||    
T  25514438 aagacggttaac 25514427  T

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Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 25986855 - 25986741
Alignment:
Q  166 tgaatttgtaactgactatatacagaaattaatcaacatttatataaagtgtaaacaacaaaggacaaacctgcaatgttgagattgagagaataacaag 265  Q
    |||||||||||| |||||||||||||||||||||||||||||||           |||||||| ||||||||||||||||||||||||||||||||||||    
T  25986855 tgaatttgtaacggactatatacagaaattaatcaacatttata-----------caacaaagcacaaacctgcaatgttgagattgagagaataacaag 25986767  T
Q  266 aagacggttaactttatgatggacct 291  Q
    ||||||||||||||||||||||||||    
T  25986766 aagacggttaactttatgatggacct 25986741  T

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Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 25077925 - 25077802
Alignment:
Q  183 atatacagaaattaatcaa-catttatataaagtgtaaacaacaaaggacaaacctgcaatgttgagattgagagaataacaagaagacggttaacttta 281  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||||| |||| ||| || ||||| ||||||||||||||||    
T  25077925 atatacagaaattaatcaaacgtttatataaagtgtaaacaacaaaacacaaacctgcaatgttgtgattaaga-aacaacaacaagacggttaacttta 25077827  T
Q  282 tgatggacc-taaaccgaggaatgt 305  Q
     |||| ||| |||||| ||||||||    
T  25077826 cgatgcaccttaaaccaaggaatgt 25077802  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 27661928 - 27662036
Alignment:
Q  215 tgtaaacaacaaaggacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacat 314  Q
    ||||||||  |||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||  | ||||  | | |||||||||||||||||    
T  27661928 tgtaaacagtaaagcacaaacctgcaaagttgagattgagaggataacaacaagacggttaactttatggcgcacctggatcaaggaatgtaccccacat 27662027  T
Q  315 atatctttc 323  Q
    || ||||||    
T  27662028 atttctttc 27662036  T

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Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 311
Target Start/End: Complemental strand, 27079131 - 27079030
Alignment:
Q  210 taaagtgtaaacaacaaaggacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccc 309  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||| || |||| | || ||| ||||| ||  ||||||||||||    
T  27079131 taaagtgtaaacagcaaagcacaaaccttcaatgttgagattgagagaataacaacaagatggctaacctcataatgcacctagacaaaggaatgtaccc 27079032  T
Q  310 ca 311  Q
    ||    
T  27079031 ca 27079030  T

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Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 27423901 - 27423975
Alignment:
Q  240 aatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacat 314  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  27423901 aatgttgagattgagagaataacaacaaagcggttaactttatgatgaacctagaccaaggaatgtacccaacat 27423975  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 27661450 - 27661516
Alignment:
Q  26 tcatcaactgaatgtagagcaatatttaaaaacactgaatctttacaataacttatgaagacttcaa 92  Q
    ||||||||| |||||||||||||||| |||||  ||||||||||| ||||||| |||||||||||||    
T  27661450 tcatcaactaaatgtagagcaatattcaaaaagtctgaatctttataataactcatgaagacttcaa 27661516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 27715028 - 27715092
Alignment:
Q  216 gtaaacaacaaaggacaaacctgcaatgttgagattgagagaataacaagaagacggttaacttt 280  Q
    ||||||| ||||| ||||||||| | | |||||||||||||||||||||||||||| ||||||||    
T  27715028 gtaaacagcaaagcacaaacctgtattcttgagattgagagaataacaagaagacgattaacttt 27715092  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 27661858 - 27661907
Alignment:
Q  160 aaacattgaatttgtaactgactatatacagaaattaatcaacatttata 209  Q
    ||||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  27661858 aaacaatgaatttgtaattgactatatacagaaattaatcaatatttata 27661907  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 27703195 - 27703243
Alignment:
Q  158 agaaacattgaatttgtaactgactatatacagaaattaatcaacattt 206  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||||    
T  27703195 agaaacaacgaatttgtaattgactatatacagaaattaatcaacattt 27703243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 26852457 - 26852408
Alignment:
Q  207 atataaagtgtaaacaacaaaggacaaacctgcaatgttgagattgagag 256  Q
    |||||||||||||||| ||||  |||||||| ||||||||||||||||||    
T  26852457 atataaagtgtaaacagcaaaccacaaacctccaatgttgagattgagag 26852408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 26852521 - 26852473
Alignment:
Q  158 agaaacattgaatttgtaactgactatatacagaaattaatcaacattt 206  Q
    |||||||  ||||||| || |||||||||||||||||||||||||||||    
T  26852521 agaaacaacgaatttgcaattgactatatacagaaattaatcaacattt 26852473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 27703284 - 27703326
Alignment:
Q  272 gttaactttatgatggacctaaaccgaggaatgtaccccacat 314  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||    
T  27703284 gttaactttatgatggagctagaccaaggaatgtaccccacat 27703326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 27079188 - 27079147
Alignment:
Q  168 aatttgtaactgactatatacagaaattaatcaacatttata 209  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||    
T  27079188 aatttgtaattgaatatatacagaaattaatcaacgtttata 27079147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 31288240 - 31288184
Alignment:
Q  216 gtaaacaacaaaggacaaacctgcaatgttgagattgagagaataacaagaagacgg 272  Q
    ||||||| ||||  |||||||||||| ||||||||  |||||||||||| |||||||    
T  31288240 gtaaacagcaaaccacaaacctgcaaagttgagatcaagagaataacaacaagacgg 31288184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 63462 - 63388
Alignment:
Q  240 aatgttgagattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacat 314  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  63462 aatgttgagattgagagaataacaacaaagcggttaactttatgatgaacctagaccaaggaatgtacccaacat 63388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 16916 - 16852
Alignment:
Q  216 gtaaacaacaaaggacaaacctgcaatgttgagattgagagaataacaagaagacggttaacttt 280  Q
    ||||||| ||||| ||||||||| | | |||||||||||||||||||||||||||| ||||||||    
T  16916 gtaaacagcaaagcacaaacctgtattcttgagattgagagaataacaagaagacgattaacttt 16852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 29270329 - 29270387
Alignment:
Q  253 agagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtacccca 311  Q
    |||||||||||||||||||||||||||||| ||||||||| ||  ||| ||||||||||    
T  29270329 agagaataacaagaagacggttaactttataatggacctagactaaggtatgtacccca 29270387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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