View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5983_high_1 (Length: 574)
Name: NF5983_high_1
Description: NF5983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5983_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 34316662 - 34316938
Alignment:
| Q |
22 |
gagccaacagtcagaagaagaatgaatggtatgcaaagcaagctaatatgaggattgaacattttccaaatcaaagaaaatccaaactgaacccaagagg |
121 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34316662 |
gagccaacaatcagaagaagaatgaatagtatgcaaagcaagctaatatgaggattgaacattttccaaatcaaagaaaatccaaactgaacccaagagg |
34316761 |
T |
|
| Q |
122 |
agatgaaccttttcaagttcttgagaagatcgacgataatgccttcaagctcgatttgccatgcgaatatggaaatatcagtgctgatgtacgtaataga |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34316762 |
agatgaaccttttcaagttcttgagaagatcgacgttaatgccttcaagctcgatttgccatccgaatatggaaatatcagtgctgatgtacgtagtaga |
34316861 |
T |
|
| Q |
222 |
tctatctatattgaacatgcaagtatttgatcataaactactaatcatcaatattctaaaccctaaacactaatata |
298 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34316862 |
tctatctatattgaacatgcgagtatttgatcataaactactaatcatcaatattctaaaccctaaacactaatata |
34316938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 345 - 442
Target Start/End: Original strand, 34316979 - 34317076
Alignment:
| Q |
345 |
taagaatgtgtatgctaaaagattatgaacacttatttgttatctctaaaccctaaacactaatttgatggatgttgatttattggagtttagaggga |
442 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34316979 |
taagaatgtgcatgctaaaagattatgaacacttatttgttatctctaaaccctaaacactaatttgatggatgttgatttgttggagtttagaggga |
34317076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 497 - 562
Target Start/End: Original strand, 34317131 - 34317196
Alignment:
| Q |
497 |
agtatatgaccagtacgtaacgactattaattgtcagtggtgagtgaacgaaagttatctgatatt |
562 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
34317131 |
agtatatgaccagtacgtaacgactgttaattgtcaccggtgagtgaacgatagttatctgatatt |
34317196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 16935218 - 16935110
Alignment:
| Q |
97 |
gaaaatccaaactgaacccaagaggagatgaaccttttcaagttcttgagaagatcgacgataatgccttcaagctcgatttgccatgcgaatatggaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||| |||||| ||||||||| | || | |||||| |
|
|
| T |
16935218 |
gaaaatccaaactgaacccaagaggagatggaccttttcatattctagagaagatcaacgataatgcctacaagctggatttgccaagtgagtgtggaaa |
16935119 |
T |
|
| Q |
197 |
tatcagtgc |
205 |
Q |
| |
|
||| ||||| |
|
|
| T |
16935118 |
tattagtgc |
16935110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University