View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5983_high_10 (Length: 306)
Name: NF5983_high_10
Description: NF5983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5983_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 1568286 - 1568574
Alignment:
| Q |
1 |
agcatgtctacacaaaatcatagtacaaaaggaaaaacgtaagttttggagcatttaagtgataaactgaacacaaggcttcaattctactaatcttaca |
100 |
Q |
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| T |
1568286 |
agcatgtctacacaaaatcatagtacaaaaggaaaaacgtaagttttggagcatttaagtgataaactgaacacaaggcttcaattctactaatcttaca |
1568385 |
T |
|
| Q |
101 |
gatatgaggtagaaaaataacaacccatcataaaagtagttttgataataatttcatagaggctgaaatgtgctcatatcaacaaataaatattgatata |
200 |
Q |
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| T |
1568386 |
gatatgaggtagaaaaataacaacccatcataaaagtagttttgataataatttcatagaggccaaaatgtgctcatatcaacaaataaatattgatata |
1568485 |
T |
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| Q |
201 |
cattacatgaattttattgcttaatgtcattccgttgttttcaata-nnnnnnncacaattgcattgtgttgtcatggttggtaatggg |
288 |
Q |
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| T |
1568486 |
cattacatgaattttattgcttaatgtcattccgttgttttcaatattttttttcacaattgcattgtgttgtcatggttggtaatggg |
1568574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 1453430 - 1453239
Alignment:
| Q |
1 |
agcatgtctacacaaaa-tcatagtacaaaaggaaaaacgtaagttttggagcatttaagtgataaactgaacacaaggcttcaattctactaatcttac |
99 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1453430 |
agcatgtctacacaaaaatcatagtacaaaaggagaaacgtaagttttgtagcatttaagtgataaactgaacacaaggcttcaattctactaatcttgc |
1453331 |
T |
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| Q |
100 |
agatatgaggtagaaaaataacaacccatcataaaagtagttttgataataatttcatagaggctgaaatgtgctcatatcaacaaataaat |
191 |
Q |
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| T |
1453330 |
agatatgaggtagaaaaatagcaacccatcataaaagtagttttgataataatttcatagaggtcgaaatgtgctcatatcaacaaataaat |
1453239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 39 - 213
Target Start/End: Complemental strand, 1451675 - 1451503
Alignment:
| Q |
39 |
gtaagttttggagcatttaagtgataaactgaacacaaggcttcaattctactaatcttacagatatgaggtagaaaaataacaacccatcataaaagta |
138 |
Q |
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|||||||||||||||| |||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||| ||||||| |||| || || |
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| T |
1451675 |
gtaagttttggagcatataagtgataaactgaacagaaagcttcaatcctgctaatcttacagatatgaggtagaaaaatagcaacccagcatacaatta |
1451576 |
T |
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| Q |
139 |
gttttgataataatttcatagaggctgaaatgtgctcatatcaacaaataaatattgatatacattacatgaatt |
213 |
Q |
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| T |
1451575 |
gttttgataataatttc--agacactgaaatgcgctcatatcaacaaataaatattgaaatacataacatgaatt |
1451503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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