View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5983_high_14 (Length: 204)
Name: NF5983_high_14
Description: NF5983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5983_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 119; Significance: 5e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 38582519 - 38582339
Alignment:
| Q |
9 |
acatcatcacctttgatcattgttgttaagtcaactttttcattcaaaattttgaannnnnnnnn---ctgcaatcatgtttaatacattatagaattct |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38582519 |
acatcatcacctttgatcattgttgttaagtcaactttttcattcaaaattttgaattttatttttttctgcaatcatgtttaatacattatagaattct |
38582420 |
T |
|
| Q |
106 |
ctcttgcagaagtttaannnnnnnataacacataacaaaattaaatgaaacatatttaactctatcttttaacgctataaa |
186 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38582419 |
ctcttgcagaagtttaatttttttataacacataacaaaattaaatgaaacatatttaactctatcttttaacgctataaa |
38582339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 38616978 - 38617150
Alignment:
| Q |
11 |
atcatcacctttgatcattgttgttaagtcaactttttcattcaaaattttgaannnnnnnnnctgcaatcatgtttaatacattatagaattctctctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||||||||| || |||||||| |||||||||||||||||| |||||| |
|
|
| T |
38616978 |
atcatcacctttgatcattgttgttaagtcaatgttatcatttaaaattttgaa--ttttattctacaatcatgattaatacattatagaattttctctt |
38617075 |
T |
|
| Q |
111 |
gcagaagtttaannnnnnnataacacataacaaaattaaatgaaacatatttaactctatcttttaacgctataaa |
186 |
Q |
| |
|
||| |||||||| |||||| | || ||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
38617076 |
gcaaaagtttaaattttttataacaaagaa-taaattaaatgaaacatatttaaccctgtcttttaacgctataaa |
38617150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 32144469 - 32144433
Alignment:
| Q |
85 |
tttaatacattatagaattctctcttgcagaagttta |
121 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
32144469 |
tttaatacattatataattctctcttgcaaaagttta |
32144433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 2433848 - 2433803
Alignment:
| Q |
77 |
caatcatgtttaatacattatagaattctctcttgcagaagtttaa |
122 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
2433848 |
caatcatgtttaatacattatagatttctctcttgcaaaagtttaa |
2433803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 2430211 - 2430172
Alignment:
| Q |
74 |
ctgcaatcatgtttaatacattatagaattctctcttgca |
113 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
2430211 |
ctgcagtcatgattaatacattatagaattctctcttgca |
2430172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 9271830 - 9271788
Alignment:
| Q |
80 |
tcatgtttaatacattatagaattctctcttgcagaagtttaa |
122 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
9271830 |
tcatgtttaatacgttatagaattctcttttgcaaaagtttaa |
9271788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 29752503 - 29752459
Alignment:
| Q |
75 |
tgcaatcatgtttaatacattatagaattctctcttgcagaagtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
29752503 |
tgcaatcatgtttaatacattatagaaatctcccttgcaaaagtt |
29752459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 41129002 - 41129049
Alignment:
| Q |
75 |
tgcaatcatgtttaatacattatagaattctctcttgcagaagtttaa |
122 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
41129002 |
tgcagtcatgtttaatacattatagaaatctctcttgcaaaaatttaa |
41129049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 4178253 - 4178299
Alignment:
| Q |
75 |
tgcaatcatgtttaatacattatagaattctctcttgcagaagttta |
121 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
4178253 |
tgcaataatgtttagtacattatagaattctcccttgcaaaagttta |
4178299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University