View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5983_low_11 (Length: 295)
Name: NF5983_low_11
Description: NF5983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5983_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 24178308 - 24178158
Alignment:
| Q |
37 |
taataataattcattgatatactattggtgctcattcccaacaaaagcttacctcatttgttcatttcctcacgcataaatttaatatttttgaagggaa |
136 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24178308 |
taatagtaattcattgctatactattggtgctcattcccaacaaaagcttacctcatttgttcatttcctcacgcataaatttaatttttttgaagggaa |
24178209 |
T |
|
| Q |
137 |
atagttgtattgttttcagggagatgccagcctggatatgatttataattt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24178208 |
atagttgtattgttttcagggagatgccagcctggatatgatttataattt |
24178158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 24177714 - 24177632
Alignment:
| Q |
200 |
aaaggaattttataat--tcaattaaaataggtggaaatatatt-aagttcattcttaatgagattagatttgatgaaattac |
279 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24177714 |
aaagaaattttataatattaaattaaaataggtggaaatatattcaagttcattcttaatgagattagatttgatgaaattac |
24177632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 42672119 - 42672148
Alignment:
| Q |
1 |
tctccaaaaatgacgcttaaaaaggaatgg |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42672119 |
tctccaaaaatgacgcttaaaaaggaatgg |
42672148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University